BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0102200 Os03g0102200|AK120183
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16265.1  | chr4:9202529-9203975 REVERSE LENGTH=115            199   2e-52
AT3G16980.1  | chr3:5794526-5795699 FORWARD LENGTH=115            198   5e-52

>AT4G16265.1 | chr4:9202529-9203975 REVERSE LENGTH=115
          Length = 114

 Score =  199 bits (507), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 1   MSTMKFCRECNNILYPKEEKDRRLLLFACRNCEHQEVSESKCVYRNEVAHAAGERTQVLQ 60
           MSTMKFCRECNNILYPKE+K++ +LL+ACRNC+HQE +++ CVYRNEV H+  E+TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61  DVASDPTLPRTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWRE 114
           DVASDPTLPRTK VRCA C HGEAVFFQATARGEEGMTLFFVCCN  C+HRWRE
Sbjct: 61  DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114



>AT3G16980.1 | chr3:5794526-5795699 FORWARD LENGTH=115
          Length = 114

 Score =  198 bits (504), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 1   MSTMKFCRECNNILYPKEEKDRRLLLFACRNCEHQEVSESKCVYRNEVAHAAGERTQVLQ 60
           MSTMKFCRECNNILYPKE+K++++LL+ACRNC+HQEV+++ CVYRNEV H+  ERTQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61  DVASDPTLPRTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWRE 114
           DVASDPTLPRTK VRC+ C H EAVFFQATARGEEGMTLFFVCCN  C HRWRE
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.134    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,461,907
Number of extensions: 80851
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)