Os03g0102100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Formyltetrahydrofolate deformylase family protein.
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Os03g0102100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Formyltetrahydrofolate deformylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.78 | 0.601 | 8.75 | -1.61 | 0.623 | 1.5 | -0.12 | -1.31 | -0.791 | 20.3 | 18.95 | 90 | -- | -- |
| 165.32 | 0.599 | 8.73 | -1.39 | 0.626 | 1.45 | -0.0653 | -- | -0.725 | 20.2 | 18.45 | 89 | -- | -- |
| 163.82 | 0.596 | 8.75 | -1.6 | 0.625 | 1.49 | -- | -1.28 | -0.789 | 20.2 | 18.95 | 90 | -- | -- |
| 165.33 | 0.599 | 8.73 | -1.38 | 0.627 | 1.44 | -- | -- | -0.724 | 20.2 | 18.5 | 89 | -- | -- |
| 173.27 | 0.613 | 8.77 | -1.85 | -- | 1.72 | -- | -2.13 | -0.881 | -- | 19 | 319 | -- | -- |
| 194.93 | 0.655 | 8.67 | -1.05 | 0.9 | -- | 0.348 | -- | -0.482 | 17.9 | -- | -- | -- | -- |
| 195.23 | 0.654 | 8.67 | -1.05 | 0.902 | -- | -- | -- | -0.48 | 18 | -- | -- | -- | -- |
| 176.76 | 0.619 | 8.72 | -1.46 | -- | 1.68 | -- | -- | -0.77 | -- | 18.1 | 311 | -- | -- |
| 210.96 | 0.68 | 8.68 | -- | 0.771 | 0.932 | -- | -- | -0.499 | 19.2 | 18.9 | 94 | -- | -- |
| 237.36 | 0.72 | 8.66 | -1.08 | -- | -- | -- | -- | -0.501 | -- | -- | -- | -- | -- |
| 224.4 | 0.701 | 8.65 | -- | 0.918 | -- | -- | -- | -0.363 | 17.9 | -- | -- | -- | -- |
| 226.86 | 0.702 | 8.65 | -- | -- | 1.15 | -- | -- | -0.474 | -- | 24.14 | 267 | -- | -- |
| 268.06 | 0.764 | 8.63 | -- | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.96 | temperature | 20.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 3 | 153.17 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 5 | 153.88 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 7 | 154.22 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 15 | 154.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 26 | 155.72 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 27 | 155.77 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 29 | 155.86 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 45 | 156.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 6 |
| 76 | 157.54 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 81 | 157.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 82 | 157.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 96 | 158.00 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 106 | 158.23 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 129 | 158.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 148 | 158.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 158 | 159.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 169 | 159.34 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 250 | 160.56 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 7 |
| 268 | 160.79 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 279 | 160.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 301 | 161.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 308 | 161.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 317 | 161.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 377 | 161.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 391 | 161.96 | temperature | 20.0 | 720 | < th | dose independent | sin | 10 | NA |
| 405 | 162.09 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 417 | 162.20 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 423 | 162.22 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 431 | 162.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 465 | 162.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 544 | 163.10 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 556 | 163.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 558 | 163.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 591 | 163.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 622 | 163.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 652 | 163.70 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 670 | 163.87 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 709 | 164.02 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 723 | 164.11 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 731 | 164.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 739 | 164.18 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 749 | 164.20 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 757 | 164.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 768 | 164.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 779 | 164.29 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 787 | 164.32 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 793 | 164.34 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 845 | 164.51 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 944 | 164.91 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 968 | 165.02 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 969 | 165.02 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 973 | 165.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 980 | 165.06 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |