BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0102100 Os03g0102100|AK060329
(303 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17360.1 | chr4:9703698-9705468 REVERSE LENGTH=329 416 e-117
AT5G47435.2 | chr5:19241779-19243424 FORWARD LENGTH=324 411 e-115
AT1G31220.1 | chr1:11157064-11158408 FORWARD LENGTH=293 72 3e-13
AT1G66520.1 | chr1:24816330-24818693 REVERSE LENGTH=356 52 5e-07
>AT4G17360.1 | chr4:9703698-9705468 REVERSE LENGTH=329
Length = 328
Score = 416 bits (1069), Expect = e-117, Method: Compositional matrix adjust.
Identities = 194/284 (68%), Positives = 232/284 (81%)
Query: 20 GIHLFQCPDTVGIVARLSECIASRGGNIHSXXXXXXXXXXXXYSRSEFTYNPMLWPRDVL 79
G H+F CPD VGIVA+LS+CIA++GGNI YSRSEF ++P+ WPR +
Sbjct: 45 GFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVFVPENKNVFYSRSEFIFDPVKWPRRQM 104
Query: 80 RTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVI 139
DF ++Q FSA S VRVP LDPKYKI++L SKQDHCL ++L++WQ+G+LPVDI CVI
Sbjct: 105 DEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVI 164
Query: 140 SNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGF 199
SNH+R + HV RFL+RHGI YHYLPT+ NK E+EILELV+GTDF+VLARYMQ+LS F
Sbjct: 165 SNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIEEEILELVKGTDFLVLARYMQLLSGNF 224
Query: 200 LKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERV 259
LK YGKD+INIHHGLLPSFKG NP +QAF+AGVKLIGAT+HFVT ELD+GPIIEQMVERV
Sbjct: 225 LKGYGKDVINIHHGLLPSFKGRNPVKQAFDAGVKLIGATTHFVTEELDSGPIIEQMVERV 284
Query: 260 SHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF 303
SHRD L+SFV KSE+LEK+CL +AIKSYCELRVLPY ++TVVF
Sbjct: 285 SHRDNLRSFVQKSEDLEKKCLMKAIKSYCELRVLPYGTQRTVVF 328
>AT5G47435.2 | chr5:19241779-19243424 FORWARD LENGTH=324
Length = 323
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/284 (67%), Positives = 228/284 (80%)
Query: 20 GIHLFQCPDTVGIVARLSECIASRGGNIHSXXXXXXXXXXXXYSRSEFTYNPMLWPRDVL 79
G+H+F C D VGIVA+LS+CIA++GGNI YSRSEF ++P+ WPR +
Sbjct: 40 GVHVFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQV 99
Query: 80 RTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVI 139
DF ++Q + A S VRVP +DPKYKI++L SKQDHCL ++L++WQ+G+LPVDI CVI
Sbjct: 100 DEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVI 159
Query: 140 SNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGF 199
SNH+R + HV RFLERHGIPYHY+ T+ NKRE +ILELV+ TDF+VLARYMQILS F
Sbjct: 160 SNHERASNTHVMRFLERHGIPYHYVSTTKENKREDDILELVKDTDFLVLARYMQILSGNF 219
Query: 200 LKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERV 259
LK YGKD+INIHHGLLPSFKGG P++QAF+AGVKLIGATSHFVT ELD+GPIIEQMVE V
Sbjct: 220 LKGYGKDVINIHHGLLPSFKGGYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESV 279
Query: 260 SHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF 303
SHRD L+SFV KSE+LEK+CL AIKSYCELRVLPY KTVVF
Sbjct: 280 SHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVLPYGTNKTVVF 323
>AT1G31220.1 | chr1:11157064-11158408 FORWARD LENGTH=293
Length = 292
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 105 KYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYL 164
+ K++V S + +G + D+ +++N KD + +GIP
Sbjct: 77 RKKLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNK---KDCGGAEYARSNGIPVLVF 133
Query: 165 PTSPGNKRE-------QEILELVQ--GTDFVVLARYMQILSEGFLKAYGKDIINIHHGLL 215
P + KRE E++++++ G DFV+LA Y++++ ++A+ K I+NIH LL
Sbjct: 134 PKA---KREPSDGLSPSELVDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALL 190
Query: 216 PSFKGGN-----PSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVV 270
P+F G + +G + G T HFV E D G I+ Q RV DT +
Sbjct: 191 PAFGGKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAK 250
Query: 271 KSENLEKQCLAEAIKSYCELRV 292
+ + E + E + + CE R+
Sbjct: 251 RVLHEEHKLYVEVVGAICEERI 272
>AT1G66520.1 | chr1:24816330-24818693 REVERSE LENGTH=356
Length = 355
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 140 SNHDRLKD---NHVRRFLERHGIPYH--YLPTSPGNKREQEILELVQGTDFVVLARYMQI 194
S DR K + V ++ G+P + P G++ L +Q + + A Y I
Sbjct: 65 SRRDRGKKVLPSPVAQYALDKGLPSDLIFSPEKAGDEAFLSALRELQ-PELCITAAYGNI 123
Query: 195 LSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPII 252
L FLK +NIH LLP ++G P ++A GV G + F +LDAGP+I
Sbjct: 124 LPTKFLKIPVHGTVNIHPSLLPLYRGAAPVQRALQDGVPETGVSLAFTVRKLDAGPVI 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,416,631
Number of extensions: 262045
Number of successful extensions: 499
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 4
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)