Os03g0100300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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Os03g0100300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.07 | 0.431 | 7.84 | 0.419 | 0.556 | -2.16 | 0.709 | -0.334 | -0.0364 | 10.8 | 24.86 | 2577 | -- | -- |
| 84.2 | 0.427 | 7.85 | 0.397 | 0.563 | -2.11 | 0.689 | -- | -0.0428 | 10.8 | 25.29 | 2581 | -- | -- |
| 86.12 | 0.432 | 7.85 | 0.417 | 0.558 | -2.15 | -- | -0.194 | -0.0411 | 10.6 | 24.82 | 2562 | -- | -- |
| 86.15 | 0.432 | 7.85 | 0.384 | 0.56 | -2.12 | -- | -- | -0.0486 | 10.6 | 25.05 | 2562 | -- | -- |
| 99.91 | 0.466 | 7.85 | 0.403 | -- | -2.21 | -- | -0.455 | -0.04 | -- | 24.83 | 2995 | -- | -- |
| 162.72 | 0.598 | 7.73 | 1.24 | 0.447 | -- | 0.665 | -- | 0.496 | 9.9 | -- | -- | -- | -- |
| 164.32 | 0.6 | 7.73 | 1.26 | 0.45 | -- | -- | -- | 0.496 | 9.52 | -- | -- | -- | -- |
| 100.09 | 0.466 | 7.87 | 0.318 | -- | -2.16 | -- | -- | -0.0544 | -- | 25.13 | 2995 | -- | -- |
| 88.37 | 0.438 | 7.86 | -- | 0.533 | -2.29 | -- | -- | -0.11 | 10.3 | 24.15 | 3866 | -- | -- |
| 176.25 | 0.62 | 7.74 | 1.26 | -- | -- | -- | -- | 0.498 | -- | -- | -- | -- | -- |
| 206.43 | 0.672 | 7.76 | -- | 0.449 | -- | -- | -- | 0.356 | 9.31 | -- | -- | -- | -- |
| 102.08 | 0.471 | 7.88 | -- | -- | -2.33 | -- | -- | -0.128 | -- | 24.85 | 3017 | -- | -- |
| 218.19 | 0.689 | 7.77 | -- | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.93 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 83.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 8 | 84.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 11 | 84.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 14 | 84.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 16 | 84.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 42 | 84.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 58 | 84.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 67 | 84.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 74 | 84.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 110 | 85.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 151 | 85.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 202 | 85.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 208 | 85.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 213 | 85.62 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 228 | 85.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 245 | 85.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 256 | 85.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 268 | 85.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 280 | 85.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 310 | 85.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 333 | 86.02 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 339 | 86.03 | radiation | 1 | 14400 | > th | dose independent | sin | 8 | NA |
| 395 | 86.13 | radiation | 1 | 14400 | < th | dose independent | sin | 8 | NA |
| 580 | 86.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 581 | 86.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 615 | 86.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 623 | 86.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 675 | 86.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 702 | 86.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 716 | 86.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 734 | 86.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 775 | 86.93 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 787 | 86.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 864 | 87.06 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 884 | 87.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 890 | 87.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 915 | 87.12 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 1000 | 87.21 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 12 |