BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0100300 Os03g0100300|AK106235
         (331 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17070.1  | chr4:9595523-9598066 REVERSE LENGTH=344            350   6e-97

>AT4G17070.1 | chr4:9595523-9598066 REVERSE LENGTH=344
          Length = 343

 Score =  350 bits (898), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 158/266 (59%), Positives = 199/266 (74%), Gaps = 2/266 (0%)

Query: 61  DDGCCRGLEGLELWGPAVKWGSDHRLLSAAACCESCKAMCKAND--CRCDSWVFCGDKKR 118
           + GCCRG++ LELWGPAVKWG+D +  S+  CC++CK MC  ND  C CDSWVFCG+K+ 
Sbjct: 66  EGGCCRGIDNLELWGPAVKWGTDFKFNSSDGCCKACKVMCSGNDGPCLCDSWVFCGNKED 125

Query: 119 CGQRFGECWLKKQKDVMAPSVVAKGDDVMWTSGLVFAKGEGIVGLETNLGTIRIQLLPGC 178
           CG +FGECWLKKQKDV+ P     G+ VMWTSGL+F +G+GIVG ET  G I ++L P C
Sbjct: 126 CGSKFGECWLKKQKDVLVPDRQGGGEKVMWTSGLIFGQGQGIVGFETEHGVIHVKLHPEC 185

Query: 179 APHSVDYFIEVLGLRNCAGCRFYRAEGRGNLWDAKGDHIKNAAYGPPYALLQGTLEVDGL 238
           APHSV Y + +L LR+CAGC+F+RAE RG+ WD++G+H+KNA +GPPYA++QG L+ +G 
Sbjct: 186 APHSVYYILSLLTLRHCAGCQFHRAENRGSYWDSEGNHVKNAPFGPPYAMIQGILQAEGN 245

Query: 239 PFKERAKEACPALRRGSVAWVGSGPEFLISLANHGEWKGAYTVFGSVVPEDMAIAEEMAL 298
            F     E CP + RGSVAWVGSGPEF ISLANH EWK +YTVFG V+PEDM + E +A 
Sbjct: 246 IFTPIPTEHCPTISRGSVAWVGSGPEFFISLANHHEWKQSYTVFGLVLPEDMDVVETIAG 305

Query: 299 LSTSTDVWSNVTVKVLRDPVYFKVKR 324
           L T  DVW++V V VL  PV   V+R
Sbjct: 306 LPTRADVWNSVNVSVLEKPVSLTVRR 331



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,044,630
Number of extensions: 281500
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)