Os02g0833300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tumour susceptibility gene 101 family protein.
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Os02g0833300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tumour susceptibility gene 101 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.5 | 0.185 | 12.5 | 0.979 | 0.265 | -0.353 | -0.0276 | 1.89 | 0.269 | 0.973 | 21.03 | 1614 | -- | -- |
| 18.42 | 0.2 | 12.5 | 0.649 | 0.268 | -0.387 | -0.0341 | -- | 0.207 | 1.98 | 15 | 8814 | -- | -- |
| 15.5 | 0.183 | 12.5 | 0.988 | 0.264 | -0.359 | -- | 1.93 | 0.271 | 0.916 | 21.23 | 1634 | -- | -- |
| 17.81 | 0.197 | 12.5 | 0.536 | 0.276 | -0.376 | -- | -- | 0.165 | 1.24 | 11.37 | 8929 | -- | -- |
| 18.73 | 0.203 | 12.5 | 0.617 | -- | -0.501 | -- | 1.2 | 0.187 | -- | 21.23 | 1634 | -- | -- |
| 20.19 | 0.211 | 12.6 | 0.324 | 0.264 | -- | -0.0279 | -- | 0.0549 | 1.2 | -- | -- | -- | -- |
| 20.2 | 0.21 | 12.6 | 0.325 | 0.264 | -- | -- | -- | 0.055 | 1.19 | -- | -- | -- | -- |
| 19.94 | 0.209 | 12.5 | 0.438 | -- | -0.563 | -- | -- | 0.135 | -- | 11.27 | 8946 | -- | -- |
| 22.57 | 0.222 | 12.6 | -- | 0.217 | -0.196 | -- | -- | 0.0421 | 0.968 | 11.37 | 8929 | -- | -- |
| 24.53 | 0.231 | 12.6 | 0.335 | -- | -- | -- | -- | 0.0604 | -- | -- | -- | -- | -- |
| 22.98 | 0.224 | 12.6 | -- | 0.27 | -- | -- | -- | 0.0189 | 1.23 | -- | -- | -- | -- |
| 24.71 | 0.232 | 12.5 | -- | -- | -0.426 | -- | -- | 0.0714 | -- | 11.27 | 8946 | -- | -- |
| 27.49 | 0.245 | 12.6 | -- | -- | -- | -- | -- | 0.0232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 2 | 15.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 6 | 15.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 9 | 15.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 24 | 15.23 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 149 | 15.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 160 | 15.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 228 | 15.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 266 | 15.70 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 277 | 15.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 284 | 15.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 303 | 15.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 304 | 15.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 334 | 15.75 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 337 | 15.75 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 374 | 15.78 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 388 | 15.79 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 402 | 15.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 418 | 15.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 427 | 15.82 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 433 | 15.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 446 | 15.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 499 | 15.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 546 | 15.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 566 | 15.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 574 | 15.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 646 | 15.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 692 | 15.91 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 772 | 15.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 792 | 15.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 793 | 15.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 816 | 15.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 854 | 15.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 870 | 15.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 873 | 15.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 878 | 15.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 879 | 15.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 901 | 15.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 913 | 15.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 919 | 15.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 920 | 15.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 924 | 15.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 989 | 15.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 996 | 15.99 | radiation | 1 | 43200 | > th | dose independent | sin | 2 | NA |
| 1000 | 15.99 | radiation | 1 | 43200 | < th | dose independent | sin | 2 | NA |