BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0833300 Os02g0833300|AK069209
(402 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13860.1 | chr5:4473212-4474318 REVERSE LENGTH=369 322 2e-88
AT3G12400.1 | chr3:3944600-3945796 REVERSE LENGTH=399 184 9e-47
AT2G38830.1 | chr2:16225777-16226772 FORWARD LENGTH=332 99 4e-21
>AT5G13860.1 | chr5:4473212-4474318 REVERSE LENGTH=369
Length = 368
Score = 322 bits (826), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/373 (45%), Positives = 232/373 (62%), Gaps = 35/373 (9%)
Query: 17 QYAHQFLNTALSQRGPSALPYAEDVKWLIRNHLVALADAFPSLHPKAALFTHNDGRAAHL 76
Q HQFL++AL+QRGPSALPYAE+ K LIR HL+ L ++ SL PK A FTHNDGR+ L
Sbjct: 9 QEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDGRSVIL 68
Query: 77 LQADGTIPIHHAGASYNLPAVLWLPEPYPRSPPLVFLSPTRDMVIKPHHPLVDRSGLVAN 136
LQADGTIP+ G SYN+P V+WL E YP+ PP V+++PTRDM+IK H V SGLV+
Sbjct: 69 LQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPSGLVS- 127
Query: 137 APYLRSWVFPSSNLVDLVRSLSHLFGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 196
PYL++W++PSSNLVDL LS F D
Sbjct: 128 LPYLQNWIYPSSNLVDLASHLSAAFSRDPPLYSQRRPPPQPSPSIGSGY----------- 176
Query: 197 XXXXXXXXXXXXXXQLAARPPP---TEDPAEVYKRNAIAKLVDMAYADAATLRPVREAEV 253
+RP P T+D AEVYK+NAI ++V+M + D +R RE E
Sbjct: 177 -----------------SRPLPPRQTDDAAEVYKKNAINRIVEMVHGDIVLMRSAREVET 219
Query: 254 DTLFAMQATLRSRGEVVSDGVRKMGEEKEALERRLQDVMMATDLMEAWVMEN---TKGAA 310
+ L ++Q+ L+ R E +++G ++M EKE LE++LQ + M TD++ +W+ EN K
Sbjct: 220 EGLLSLQSDLKRREEEINNGFKEMVIEKETLEQQLQVIAMNTDVLGSWIRENQGKAKDLL 279
Query: 311 GDTEADEAIETADVLSKQMLECTAADLALEDTIYALDKAIQEGSVPFDGYLRSVRALARE 370
D + D++ E D LSKQMLECTA DLA+ED +Y++DK+ ++GS+PFD YLR+VR L+RE
Sbjct: 280 VDLDVDDSFECIDSLSKQMLECTALDLAIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSRE 339
Query: 371 QFFQRVLSTKVNK 383
QFF R + KV +
Sbjct: 340 QFFHRATAEKVRE 352
>AT3G12400.1 | chr3:3944600-3945796 REVERSE LENGTH=399
Length = 398
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Query: 17 QYAHQFLNTALSQRGPSALPYAEDVKWLIRNHLVALADAFPSLHPKAALFTHNDGRAAHL 76
Q QFL++ALSQRGPS++PY E KWLIR HL+ L ++PSL PK A F HNDGR+ +L
Sbjct: 9 QQVQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTASFMHNDGRSVNL 68
Query: 77 LQADGTIPIHHAGASYNLPAVLWLPEPYPRSPPLVFLSPTRDMVIKPHHPLVDRSGLVAN 136
LQADGTIP+ G +YN+P ++WL E YPR PP V+++PT DM+IK H V SGLV+
Sbjct: 69 LQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVS- 127
Query: 137 APYLRSWVFPSSNLVDLVRSLSHLFGLD 164
PYL++WV+PSSNLVDLV LS F D
Sbjct: 128 LPYLQNWVYPSSNLVDLVSDLSAAFARD 155
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Query: 219 TEDPAEVYKRNAIAKLVDMAYADAATLRPVREAEVDTLFAMQATLRSRGEVVSDGVRKMG 278
++D AEV+KRNAI K+V+M ++D ++R REAE + L ++QA L+ R + ++ G+++M
Sbjct: 216 SDDAAEVFKRNAINKMVEMVHSDLVSMRRAREAEAEELLSLQAGLKRREDELNIGLKEMV 275
Query: 279 EEKEALERRLQDVMMATDLMEAWVMENTKGAAG--DTEADEAIETADVLSKQMLECTAAD 336
EEKE LE++LQ + M TD++++WV EN D + D A E D LSKQMLECTA D
Sbjct: 276 EEKETLEQQLQIISMNTDILDSWVRENQGKTKNLVDLDVDNAFECGDTLSKQMLECTALD 335
Query: 337 LALEDTIYALDKAIQEGSVPFDGYLRSVRALAREQFFQRVLSTKV 381
LA+ED IY+LDK+ Q+G VPFD YLR+VR L+REQFF R +KV
Sbjct: 336 LAIEDAIYSLDKSFQDGVVPFDQYLRNVRLLSREQFFHRATGSKV 380
>AT2G38830.1 | chr2:16225777-16226772 FORWARD LENGTH=332
Length = 331
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 8/148 (5%)
Query: 21 QFLNTALSQRGPSALPYAE-DVKWLIRNHLVALADAFPSLHPKAALFTHNDGRAAHLLQA 79
+F+ AL G AL Y + D KWLIR HL +L +P+ F HN+G L
Sbjct: 12 KFIEKALLATGSFALSYTDPDQKWLIRKHLTSLLQDYPNFELSTDTFNHNNGAKVQLFCL 71
Query: 80 DGTIPIHHAGASYNLPAV---LWLPEPYPRSPPLVFLSPTRDMVIKPHHPLVDRSGLVAN 136
+G++ I ++ LP V +W+ E YP +PPLVF++P + I+ +HP ++ SG
Sbjct: 72 EGSLRIR--SSTTQLPTVQLTIWIHENYPLTPPLVFINPN-SIPIRNNHPFINSSG-YTK 127
Query: 137 APYLRSWVFPSSNLVDLVRSLSHLFGLD 164
+ Y+ +W P NL+D +R+L + D
Sbjct: 128 SRYIETWEHPRCNLLDFIRNLKKVLAND 155
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 218 PTEDPAEVYKRNAIAKLVDMAYADAATLRPVREAEVDTLFAMQATLRSRGEVVSDGVRKM 277
PT + + V + A+ +L + D T+ E E++ L+ +Q+ ++ R E V + ++
Sbjct: 166 PTRNQS-VSRTEALDRLATSLHYDVLTIMERSEEEIENLWKLQSEVKQRSESVKSIITEL 224
Query: 278 GEEKEALERRLQDVMMATDLMEAWVMEN----TKGAAGDTEADEAIETADVLSKQMLECT 333
E+ L+ R + +D++ WV N T G E IE+ +E
Sbjct: 225 EIERGTLKVRALKLKEDSDVLTTWVEMNYLKLTSMDMGRIEEMFEIESE-------VEGL 277
Query: 334 AADLALEDTIYALDKAIQEGSVPFDGYLRSVRALAREQFFQRVLST 379
A D A+ED + L++A + G + YL+ VR LAREQFF + LS+
Sbjct: 278 AGDDAIEDVLRVLEEAAERGELEIGSYLKQVRVLAREQFFLKHLSS 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,842,713
Number of extensions: 261705
Number of successful extensions: 763
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)