Os02g0830700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os02g0830700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 401.37 | 0.941 | 4.26 | -0.65 | 1.27 | 2.43 | -0.403 | 1.17 | -0.602 | 17 | 26.3 | 6081 | -- | -- |
| 402.41 | 0.934 | 4.29 | -0.942 | 1.24 | 2.46 | -0.455 | -- | -0.678 | 17 | 26.2 | 6080 | -- | -- |
| 401.78 | 0.934 | 4.26 | -0.657 | 1.27 | 2.43 | -- | 1.15 | -0.606 | 17 | 26.29 | 6080 | -- | -- |
| 402.65 | 0.935 | 4.3 | -0.995 | 1.26 | 2.5 | -- | -- | -0.707 | 17 | 26.29 | 6080 | -- | -- |
| 483.7 | 1.02 | 4.27 | -0.899 | -- | 2.43 | -- | 0.522 | -0.711 | -- | 26.34 | 6191 | -- | -- |
| 587.92 | 1.14 | 4.17 | 0.0591 | 1.32 | -- | -0.576 | -- | -0.0892 | 17.2 | -- | -- | -- | -- |
| 588.74 | 1.14 | 4.17 | 0.0597 | 1.31 | -- | -- | -- | -0.0918 | 17.2 | -- | -- | -- | -- |
| 483.89 | 1.02 | 4.29 | -1.06 | -- | 2.46 | -- | -- | -0.757 | -- | 26.3 | 6191 | -- | -- |
| 425.54 | 0.961 | 4.28 | -- | 1.23 | 2.23 | -- | -- | -0.53 | 17 | 26.4 | 6084 | -- | -- |
| 678.72 | 1.22 | 4.15 | 0.0137 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 588.84 | 1.14 | 4.17 | -- | 1.31 | -- | -- | -- | -0.0985 | 17.2 | -- | -- | -- | -- |
| 496.68 | 1.04 | 4.23 | -- | -- | 2.05 | -- | -- | -0.494 | -- | 28.2 | 6269 | -- | -- |
| 678.72 | 1.22 | 4.15 | -- | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 399.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 2 | 400.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 4 | 400.99 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 9 | 402.33 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 21 | 403.47 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 23 | 403.50 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 39 | 404.20 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 44 | 404.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 57 | 405.85 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 72 | 406.41 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 81 | 406.96 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 88 | 407.25 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 91 | 407.38 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 101 | 407.51 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 105 | 407.63 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 133 | 408.16 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 177 | 408.65 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 178 | 408.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 189 | 408.76 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 212 | 408.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 214 | 408.97 | temperature | 20 | 14400 | > th | dose dependent | sin | 10 | NA |
| 226 | 409.06 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 251 | 409.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 262 | 409.38 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 284 | 409.47 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 289 | 409.52 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 463 | 410.36 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 489 | 410.45 | temperature | 25 | 14400 | > th | dose dependent | sin | 20 | NA |
| 538 | 410.57 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 547 | 410.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 567 | 410.68 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 576 | 410.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 609 | 410.81 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 636 | 410.87 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 675 | 411.05 | temperature | 25 | 14400 | > th | dose independent | sin | 14 | NA |
| 879 | 411.93 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 19 |
| 969 | 412.33 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 976 | 412.35 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 22 |