BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0830700 Os02g0830700|AK101172
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60630.1 | chr1:22334754-22336785 REVERSE LENGTH=653 67 1e-11
AT1G10850.1 | chr1:3612228-3614343 FORWARD LENGTH=664 66 2e-11
AT5G67200.1 | chr5:26813893-26816555 REVERSE LENGTH=670 49 4e-06
>AT1G60630.1 | chr1:22334754-22336785 REVERSE LENGTH=653
Length = 652
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 47 LPWRRDTAPALCSSWLGVRQCSQPPRDRRVTKLVLENLNLTGVLTATLLAPLSELRVLSL 106
+PWR T P +W GV++C + RV+KLVLENLNL+G L L L +LRVLS
Sbjct: 42 IPWR-GTDPC---NWEGVKKCMKG----RVSKLVLENLNLSGSLNGKSLNQLDQLRVLSF 93
Query: 107 KSNALTGXXXXXXXXXXXXXXXXXXXXNRLQGRIPPTLALLHRATVLVLSSNLLHG 162
K N+L+G N G P +L LHR +VLS N G
Sbjct: 94 KGNSLSG--SIPNLSGLVNLKSLYLNDNNFSGEFPESLTSLHRLKTVVLSRNRFSG 147
>AT1G10850.1 | chr1:3612228-3614343 FORWARD LENGTH=664
Length = 663
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 47 LPWRRDTAPALCSSWLGVRQCSQPPRDRRVTKLVLENLNLTGVLTATLLAPLSELRVLSL 106
+ WR LC+ W GVR+C + RV+KLVLE LNLTG L L L +LRVLS
Sbjct: 51 ISWR---GTDLCN-WQGVREC----MNGRVSKLVLEYLNLTGSLNEKSLNQLDQLRVLSF 102
Query: 107 KSNALTGXXXXXXXXXXXXXXXXXXXXNRLQGRIPPTLALLHRATVLVLSSNLLHG 162
K+N+L+G N G P +L LHR + LS N L G
Sbjct: 103 KANSLSG--SIPNLSGLVNLKSVYLNDNNFSGDFPESLTSLHRLKTIFLSGNRLSG 156
>AT5G67200.1 | chr5:26813893-26816555 REVERSE LENGTH=670
Length = 669
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 61 WLGVRQCSQPPRDRRVTKLVLENLNLTGVLTATLLAPLSELRVLSLKSNALTGXXXXXXX 120
W GV+ C+Q R+ +LVL + L G ++ L+ L +LRVLSL++N+L G
Sbjct: 64 WRGVK-CAQG----RIVRLVLSGVGLRGYFSSATLSRLDQLRVLSLENNSLFG--PIPDL 116
Query: 121 XXXXXXXXXXXXXNRLQGRIPPTLALLHRATVLVLSSNLLHGA 163
N+ G PP++ LHR +L +S N G+
Sbjct: 117 SHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGS 159
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,493,460
Number of extensions: 128836
Number of successful extensions: 1004
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)