Os02g0826200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : dTDP-4-dehydrorhamnose reductase family protein.
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Os02g0826200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : dTDP-4-dehydrorhamnose reductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.92 | 0.479 | 8.82 | -1.49 | 1.33 | -0.834 | -1.03 | -0.284 | -0.118 | 16.8 | 1012 | 13904 | -- | -- |
| 104.26 | 0.476 | 8.82 | -1.57 | 1.33 | -0.82 | -1.12 | -- | -0.129 | 16.7 | 1011 | 13948 | -- | -- |
| 106.5 | 0.481 | 8.82 | -1.49 | 1.32 | -0.825 | -- | -0.264 | -0.117 | 16.9 | 1012 | 14117 | -- | -- |
| 106.73 | 0.481 | 8.83 | -1.59 | 1.33 | -0.826 | -- | -- | -0.15 | 16.9 | 1012 | 14416 | -- | -- |
| 199.81 | 0.658 | 8.82 | -1.58 | -- | -0.807 | -- | -0.124 | -0.168 | -- | 1011 | 14423 | -- | -- |
| 135.59 | 0.546 | 8.77 | -1.16 | 1.32 | -- | -1.07 | -- | 0.114 | 16.8 | -- | -- | -- | -- |
| 138.36 | 0.551 | 8.77 | -1.17 | 1.32 | -- | -- | -- | 0.109 | 17 | -- | -- | -- | -- |
| 199.88 | 0.658 | 8.82 | -1.63 | -- | -0.804 | -- | -- | -0.181 | -- | 1011 | 14429 | -- | -- |
| 163.25 | 0.595 | 8.78 | -- | 1.35 | -0.531 | -- | -- | 0.105 | 16.9 | 1010 | 16593 | -- | -- |
| 230.13 | 0.709 | 8.76 | -1.22 | -- | -- | -- | -- | 0.0748 | -- | -- | -- | -- | -- |
| 174.45 | 0.618 | 8.74 | -- | 1.34 | -- | -- | -- | 0.239 | 16.9 | -- | -- | -- | -- |
| 259.23 | 0.75 | 8.76 | -- | -- | -0.501 | -- | -- | 0.0807 | -- | 1010 | 16511 | -- | -- |
| 269.29 | 0.766 | 8.73 | -- | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 11 | 98.29 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 21 | 99.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 77 | 102.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 84 | 102.30 | temperature | 30.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 93 | 102.44 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 113 | 102.76 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 114 | 102.79 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 116 | 102.81 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 15 |
| 121 | 102.84 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 16 |
| 127 | 102.92 | temperature | 25.0 | 720 | > th | dose independent | sin | 19 | NA |
| 143 | 103.02 | temperature | 25.0 | 720 | < th | dose independent | sin | 19 | NA |
| 152 | 103.08 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 155 | 103.09 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 183 | 103.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 201 | 103.57 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 212 | 103.68 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 8 |
| 222 | 103.79 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 235 | 103.91 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 242 | 103.93 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 250 | 103.95 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 258 | 104.00 | temperature | 25.0 | 720 | > th | dose independent | rect. | 14 | 7 |
| 281 | 104.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 317 | 104.38 | temperature | 10.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 328 | 104.42 | temperature | 20.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 341 | 104.48 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 349 | 104.52 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 378 | 104.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 412 | 104.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 415 | 104.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 428 | 104.96 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 432 | 104.98 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 452 | 105.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 477 | 105.16 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 482 | 105.16 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 508 | 105.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 554 | 105.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 568 | 105.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 615 | 105.49 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 626 | 105.51 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 644 | 105.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 834 | 105.74 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 835 | 105.74 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 906 | 105.79 | temperature | 30.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 927 | 105.80 | atmosphere | 1010.0 | 14400 | > th | dose dependent | no | NA | NA |
| 975 | 105.83 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 13 | 23 |