BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0826200 Os02g0826200|AK070787
         (317 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00560.4  | chr4:240798-242267 REVERSE LENGTH=332              358   2e-99

>AT4G00560.4 | chr4:240798-242267 REVERSE LENGTH=332
          Length = 331

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/327 (54%), Positives = 229/327 (70%), Gaps = 10/327 (3%)

Query: 1   MERK-RVLVVGGSXXXXXXXXXXXXXXXE-----VDVAFTHHRDTPPQPLLHALPGLRAF 54
           ME+K +VL+VGG+                      DVAFTHH    P  LL A P   AF
Sbjct: 1   MEKKTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFPHSPAF 60

Query: 55  RVDLRSGDGLRAVSESFGQPHVIVNCAAISVPRQCETDPAAAMATNVPSSLVTWLLSFGN 114
            VDL+SG GL ++S+ F QP V+VNCAA+SVPR CE DP +AM+ NVP+SLV WL SF  
Sbjct: 61  PVDLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFET 120

Query: 115 DNTLLIHLSTDQVYEGVKSFYKEDDETLPVNMYGKSKVAAEKFIIEQCSNYAILRSSIIY 174
           + TLLIHLSTDQVY+GVKSFYKE+DET+ VN+YGKSKVAAE  I ++C ++AILRSSII+
Sbjct: 121 NKTLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQSFAILRSSIIF 180

Query: 175 GPQTISPVAKSLPIQWMDSVLSQGQQVQFFNDEFRCPVYVKDMVDVVLSLTKSWLADGKA 234
           GPQT+SP+ K+LPIQW+DS L +G  V FF+DEFRCP+YVKD+V++   L   W++D K 
Sbjct: 181 GPQTVSPLPKTLPIQWIDSSLKKGDTVDFFHDEFRCPIYVKDLVNITFKLIDRWVSDDKQ 240

Query: 235 VQVLLNVGGPDRVSRLQMAESVADVRGYXXXXXXXXXXXXX----DRGVASPPDISMDIT 290
           ++++LN GGP+R+SR+QMA+ VA+VRGY                 DRGV SP DISMDIT
Sbjct: 241 MRLVLNAGGPERLSRVQMAQMVAEVRGYDLSLIKHVSASSLFCQIDRGVVSPADISMDIT 300

Query: 291 KLTQMLGIKPISFQDGVRATLAAEAST 317
           KL   L + P SF++GVR TL +E+ +
Sbjct: 301 KLIHTLELSPTSFKEGVRLTLDSESHS 327



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,065,074
Number of extensions: 228207
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)