Os02g0822300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os02g0822300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.9 | 0.175 | 12.3 | -0.404 | 0.599 | -0.476 | -0.48 | 0.0491 | -0.0557 | 22.8 | 23.6 | 2981 | -- | -- |
| 13.9 | 0.174 | 12.3 | -0.393 | 0.596 | -0.48 | -0.486 | -- | -0.0551 | 22.8 | 23.6 | 2981 | -- | -- |
| 14.86 | 0.18 | 12.3 | -0.389 | 0.6 | -0.478 | -- | 0.0557 | -0.0555 | 22.8 | 23.6 | 2993 | -- | -- |
| 14.86 | 0.18 | 12.3 | -0.369 | 0.599 | -0.477 | -- | -- | -0.0484 | 22.8 | 23.51 | 3009 | -- | -- |
| 31.78 | 0.263 | 12.3 | -0.558 | -- | -0.734 | -- | 0.592 | -0.105 | -- | 25.26 | 2239 | -- | -- |
| 22.43 | 0.222 | 12.2 | -0.171 | 0.617 | -- | -0.484 | -- | 0.151 | 22.9 | -- | -- | -- | -- |
| 23.41 | 0.227 | 12.2 | -0.151 | 0.619 | -- | -- | -- | 0.153 | 22.9 | -- | -- | -- | -- |
| 32.27 | 0.265 | 12.3 | -0.388 | -- | -0.72 | -- | -- | -0.0513 | -- | 24.8 | 2257 | -- | -- |
| 17.96 | 0.197 | 12.3 | -- | 0.602 | -0.374 | -- | -- | 0.0295 | 22.7 | 23.57 | 2938 | -- | -- |
| 47.23 | 0.321 | 12.2 | -0.137 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 24.01 | 0.229 | 12.2 | -- | 0.618 | -- | -- | -- | 0.169 | 22.9 | -- | -- | -- | -- |
| 30.78 | 0.258 | 12.3 | -- | -- | -0.611 | -- | -- | -0.0301 | -- | 25 | 820 | -- | -- |
| 47.73 | 0.322 | 12.2 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 10 |
| 4 | 13.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 5 | 13.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 38 | 13.73 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 39 | 13.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 58 | 13.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 65 | 13.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 83 | 13.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 114 | 13.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 158 | 13.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 188 | 13.84 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 189 | 13.84 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 190 | 13.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 200 | 13.84 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 333 | 13.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 923 | 14.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 928 | 14.11 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |