BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0822300 Os02g0822300|J080043B20
         (156 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04430.2  | chr5:1250602-1253523 REVERSE LENGTH=335            170   2e-43

>AT5G04430.2 | chr5:1250602-1253523 REVERSE LENGTH=335
          Length = 334

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 12/158 (7%)

Query: 1   IYLILSKLSEDVHYPPNLSSPFPYAGLGFPSYPGVPVGYMIPQVPYN--NAVNYGPNGYG 58
           I LIL+KL+ED HY  N+ SP+ YAGL +  + G P  Y +P V     N+VNY PNG G
Sbjct: 184 IDLILAKLTEDDHYSQNVHSPYSYAGLFYSGFHGPPYAYALPSVATAGYNSVNYAPNGSG 243

Query: 59  GRYQNNKPSTPMRSPANNDAQDSLTIGIADEHIGAVVGRAGRNITEIIQASGARIKISDR 118
           G+YQN+K           +A  ++TIG+ADEHIG V+GR GRNI EI Q +GARIKISDR
Sbjct: 244 GKYQNHK----------EEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDR 293

Query: 119 GDFIAGTSERKVTITGTSEAIQAAESMIMQRVTASSER 156
           GDF++GT++RKV+ITG   AIQ AE+MI Q+V +++ER
Sbjct: 294 GDFMSGTTDRKVSITGPQRAIQQAETMIKQKVDSATER 331



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,488,544
Number of extensions: 159460
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 3
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)