Os02g0819700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Zim17-type family protein.
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Os02g0819700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Zim17-type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.45 | 0.306 | 11.7 | 0.171 | 0.76 | 0.428 | 0.152 | -0.162 | -0.0246 | 20 | 20.5 | 1079 | -- | -- |
| 42.52 | 0.304 | 11.7 | 0.199 | 0.755 | 0.447 | 0.121 | -- | -0.0173 | 20 | 20.51 | 1096 | -- | -- |
| 42.52 | 0.304 | 11.7 | 0.169 | 0.764 | 0.432 | -- | -0.145 | -0.0241 | 20 | 20.52 | 1113 | -- | -- |
| 42.56 | 0.304 | 11.7 | 0.196 | 0.762 | 0.452 | -- | -- | -0.0185 | 20 | 20.6 | 1106 | -- | -- |
| 70.83 | 0.392 | 11.7 | 0.145 | -- | 0.535 | -- | -0.0884 | -0.0766 | -- | 21.21 | 751 | -- | -- |
| 47.72 | 0.324 | 11.6 | 0.384 | 0.783 | -- | 0.157 | -- | 0.0841 | 20.2 | -- | -- | -- | -- |
| 47.8 | 0.324 | 11.6 | 0.379 | 0.782 | -- | -- | -- | 0.0842 | 20.2 | -- | -- | -- | -- |
| 70.84 | 0.392 | 11.7 | 0.173 | -- | 0.548 | -- | -- | -0.0746 | -- | 21.2 | 751 | -- | -- |
| 42.53 | 0.304 | 11.7 | -- | 0.762 | 0.583 | -- | -- | -0.0447 | 20 | 19.6 | 2560 | -- | -- |
| 81.51 | 0.422 | 11.6 | 0.373 | -- | -- | -- | -- | 0.0751 | -- | -- | -- | -- | -- |
| 51.59 | 0.336 | 11.6 | -- | 0.78 | -- | -- | -- | 0.042 | 20.2 | -- | -- | -- | -- |
| 71.62 | 0.394 | 11.6 | -- | -- | 0.563 | -- | -- | -0.0783 | -- | 21.3 | 751 | -- | -- |
| 85.18 | 0.431 | 11.6 | -- | -- | -- | -- | -- | 0.0337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.06 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 41.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 3 | 41.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 8 | 41.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 9 | 41.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 11 | 41.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 33 | 41.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 49 | 41.59 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 60 | 41.67 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 79 | 41.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 87 | 41.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 91 | 41.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 102 | 41.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 108 | 41.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 167 | 42.02 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 202 | 42.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 236 | 42.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 240 | 42.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 251 | 42.16 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 263 | 42.18 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 274 | 42.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 297 | 42.22 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 21 |
| 303 | 42.23 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 19 |
| 348 | 42.28 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 413 | 42.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 414 | 42.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 492 | 42.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 583 | 42.51 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 22 |
| 635 | 42.55 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 13 | 19 |
| 640 | 42.55 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 650 | 42.56 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 690 | 42.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 693 | 42.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 726 | 42.59 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 13 |
| 801 | 42.62 | humidity | 80 | 14400 | > th | dose dependent | sin | 8 | NA |
| 850 | 42.64 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 20 |
| 852 | 42.64 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 22 |
| 890 | 42.66 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 4 |
| 929 | 42.66 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 985 | 42.69 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 13 |
| 986 | 42.69 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 14 |