BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0819700 Os02g0819700|AK067374
         (188 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54826.1  | chr3:20310354-20311652 FORWARD LENGTH=224          171   2e-43
AT5G27280.1  | chr5:9617548-9618369 FORWARD LENGTH=213             54   5e-08
AT1G68730.1  | chr1:25810321-25811128 REVERSE LENGTH=171           53   7e-08

>AT3G54826.1 | chr3:20310354-20311652 FORWARD LENGTH=224
          Length = 223

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 100/141 (70%), Gaps = 8/141 (5%)

Query: 40  RSLQTIMEAS----NNASDDRNQDIEDSKTDTVPATVPSSDSGFKVRDTSNLKISPRHDL 95
           R L  I EA+     N  +  N   E +K  + PAT PS +    V+  S LKI+PRHD 
Sbjct: 81  RQLSVIREANEASVTNVCNSSNSATESAKVPS-PAT-PSEE--MMVKYKSQLKINPRHDF 136

Query: 96  AMIFTCKVCETRSMKMASKESYEKGVVVARCGGCNNFHLIADRLGWFGEPGSIEDFLAEQ 155
            M+FTCKVC+TRSMKMAS+ESYE GVVV RCGGC+N HLIADR GWFGEPGS+EDFLA Q
Sbjct: 137 MMVFTCKVCDTRSMKMASRESYENGVVVVRCGGCDNLHLIADRRGWFGEPGSVEDFLASQ 196

Query: 156 GEEVKKGSTDTLNFTLEDLVG 176
           GEE KKGS D+LN T EDL G
Sbjct: 197 GEEFKKGSMDSLNLTPEDLAG 217



>AT5G27280.1 | chr5:9617548-9618369 FORWARD LENGTH=213
          Length = 212

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 90  SPRHDLAMIFTCKVCETRSMKMASKESYEKGVVVARCGGCNNFHLIADRLGWFGE 144
           SPR  + + FTC VC  R+ +  +  +Y  G V  +C GCN FH + D L  F E
Sbjct: 116 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE 170



>AT1G68730.1 | chr1:25810321-25811128 REVERSE LENGTH=171
          Length = 170

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 91  PRHDLAMIFTCKVCETRSMKMASKESYEKGVVVARCGGCNNFHLIADRLGWFGE 144
           PR  L + FTC  C  R+ ++ ++ +YEKG+V  +C GC   H + D LG   E
Sbjct: 102 PRRSLQVEFTCNSCGERTKRLINRHAYEKGLVFVQCAGCLKHHKLVDNLGLIVE 155



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,080,770
Number of extensions: 166410
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 3
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)