FiT-DB / Search/ Help/ Sample detail

Os02g0802200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase family 79, N-terminal protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.0494) R2 : 0.562
β1 : -2.86 (0.181) R2dD : 0.25 R2D : 0.153
β2 : 0.918 (0.132) R2dC : 0.0497 R2C : -0.0483
β3 : 2.84 (0.181) R2dE : 0.251 R2E : 0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.22 (0.105) R2dN8 : 0.173 R2N8 : 0.0586
σ : 0.923
deviance : 392.73
__
_____
C
peak time of C : 6.88
E
wheather : humidity
threshold : 87
memory length : 1645
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.3
open length of G : 5.54

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
392.54 0.931 9.17 -2.78 0.812 2.76 0.619 0.98 -1.17 6.67 85.86 1617 15.2 5.95
392.67 0.923 9.17 -2.83 0.891 2.87 0.651 -- -1.2 6.63 87.39 1635 15.2 5.92
392.46 0.923 9.17 -2.71 0.884 2.81 -- 1.12 -1.19 6.72 87.6 1635 15.2 5.9
392.73 0.923 9.17 -2.86 0.918 2.84 -- -- -1.22 6.88 87 1645 15.3 5.54
409.92 0.943 9.19 -2.68 -- 2.26 -- 1.24 -1.15 -- 85.69 1416 15.6 5.58
600.28 1.15 9.19 -2.89 0.372 -- 1.57 -- -1.2 5 -- -- -- --
604.83 1.15 9.19 -2.89 0.426 -- -- -- -1.21 6.56 -- -- -- --
412.1 0.945 9.18 -2.86 -- 2.35 -- -- -1.13 -- 85.41 1415 15.6 5.44
598.01 1.14 9.17 -- 0.928 3.08 -- -- -1.02 7.43 91.25 1637 15.9 6.48
614.3 1.16 9.19 -2.88 -- -- -- -- -1.2 -- -- -- -- --
825.6 1.34 9.11 -- 0.392 -- -- -- -0.886 6.99 -- -- -- --
559.41 1.1 9.25 -- -- 3.24 -- -- -1.33 -- 106.1 28424 16.1 6.07
833.67 1.35 9.12 -- -- -- -- -- -0.88 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 406.53 humidity 90 1440 < th dose dependent rect. 15 6
4 408.55 humidity 50 1440 > th dose dependent rect. 15 6
11 409.34 humidity 50 1440 > th dose dependent rect. 13 10
17 409.92 humidity 90 1440 < th dose dependent rect. 16 1
18 409.99 humidity 60 720 > th dose dependent rect. 17 4
56 413.32 humidity 80 1440 < th dose dependent rect. 15 17
76 414.49 humidity 50 1440 > th dose dependent rect. 16 1
105 415.56 humidity 80 1440 < th dose dependent sin 14 NA
134 417.04 temperature 25 720 > th dose dependent rect. 17 15
135 417.12 humidity 50 1440 > th dose dependent sin 18 NA
141 417.25 humidity 90 1440 < th dose dependent sin 17 NA
205 419.61 temperature 30 1440 > th dose dependent sin 14 NA
219 420.11 temperature 30 1440 > th dose dependent rect. 14 5
257 420.51 humidity 70 1440 > th dose independent sin 14 NA
275 420.98 humidity 70 720 > th dose independent rect. 18 9
317 421.62 humidity 70 1440 < th dose independent sin 14 NA
320 421.78 temperature 30 1440 > th dose independent rect. 16 3
391 422.55 temperature 25 720 > th dose dependent rect. 17 7
420 423.07 temperature 30 720 < th dose independent rect. 17 10
471 423.44 temperature 30 1440 < th dose independent rect. 16 8
477 423.53 temperature 30 1440 < th dose independent rect. 16 13
486 423.61 temperature 30 1440 < th dose independent rect. 16 5
552 424.42 temperature 30 1440 > th dose dependent no NA NA
723 425.64 humidity 70 1440 > th dose independent rect. 14 17
729 425.75 humidity 70 1440 > th dose independent rect. 14 15
738 425.80 humidity 80 720 > th dose independent rect. 15 7
742 425.88 humidity 70 1440 > th dose independent rect. 14 11
767 426.25 humidity 70 1440 < th dose independent rect. 14 17
777 426.38 humidity 70 1440 < th dose independent rect. 14 6
849 427.07 humidity 70 720 > th dose independent rect. 17 3
955 428.35 temperature 30 1440 > th dose independent sin 13 NA