BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0802200 Os02g0802200|AK107538
(541 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G34940.2 | chr5:13235912-13238718 REVERSE LENGTH=537 644 0.0
AT5G61250.2 | chr5:24632294-24634597 REVERSE LENGTH=540 543 e-155
AT5G07830.1 | chr5:2504168-2506567 FORWARD LENGTH=544 531 e-151
>AT5G34940.2 | chr5:13235912-13238718 REVERSE LENGTH=537
Length = 536
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/495 (60%), Positives = 381/495 (76%), Gaps = 9/495 (1%)
Query: 51 DEDFVCATLDWWPPDKCDYGTCSWGLATLLNMDLSNKILLNAVKAFSPLKLRLGGSLQDV 110
DEDF+CATLDWWPP+KCDYG+CSW A++LN+DL+N IL NA+KAF+PLK+R+GG+LQD+
Sbjct: 45 DEDFICATLDWWPPEKCDYGSCSWDHASILNLDLNNVILQNAIKAFAPLKIRIGGTLQDI 104
Query: 111 LIYDTGDPRQPCTPFTKNSSAMFGFTQGCLPLHRWDELNAFFQKSGAKIIFGLNALNGRV 170
+IY+T D +QPC PFTKNSS +FG+TQGCLP+ RWDELNAFF+K+G K+IFGLNAL+GR
Sbjct: 105 VIYETPDSKQPCLPFTKNSSILFGYTQGCLPMRRWDELNAFFRKTGTKVIFGLNALSGRS 164
Query: 171 PMSDDSLGGPWNYTNAASFIRYTVSKGYDIHGWELGNELSGSGVGARVDADQYAQDVLAL 230
S+ G WNYTNA SFIR+T Y I GWELGNEL GSGVGARV A+QYA D + L
Sbjct: 165 IKSNGEAIGAWNYTNAESFIRFTAENNYTIDGWELGNELCGSGVGARVGANQYAIDTINL 224
Query: 231 KQIIDNSYQGHASKPLVIAPGGFFDAAWFTELISRTKPNQMDVMTHHIYNLGPGVDTHLI 290
+ I++ Y+ + PLVI PGGFF+ WFTE +++ + N ++ T HIY+LGPGVD HLI
Sbjct: 225 RNIVNRVYKNVSPMPLVIGPGGFFEVDWFTEYLNKAE-NSLNATTRHIYDLGPGVDEHLI 283
Query: 291 DKILDPSYLDGEAGTFSSLQGILKSAGTSTVAWVGEAGGAYNSGHHLVTDAFVFSFWYLD 350
+KIL+PSYLD EA +F SL+ I+K++ T VAWVGE+GGAYNSG +LV++AFV+SFWYLD
Sbjct: 284 EKILNPSYLDQEAKSFRSLKNIIKNSSTKAVAWVGESGGAYNSGRNLVSNAFVYSFWYLD 343
Query: 351 QLGMSSKYDTKTYCRQTLIGGNYGLLNTTTFEPNPDYYSALLWNRLMGTKVLSATFNGTN 410
QLGM+S YDTKTYCRQ+LIGGNYGLLNTT F PNPDYYSAL+W +LMG K L TF+GT
Sbjct: 344 QLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYYSALIWRQLMGRKALFTTFSGTK 403
Query: 411 KIRAYAHCARDSRGITLLLINLSGNNTNHIYVTSEGVQPYSTK-----KEGRRRFGRIPG 465
KIR+Y HCAR S+GIT+LL+NL +NT + E +S + K +R ++ G
Sbjct: 404 KIRSYTHCARQSKGITVLLMNL--DNTTTVVAKVELNNSFSLRHTKHMKSYKRASSQLFG 461
Query: 466 LGEEAQLIREEYHLTPKDGSLQSQHVLLNGNVLAPDANGEIPKLEPVQVEGTQPITVAPY 525
G + REEYHLT KDG+L SQ +LLNGN L ++ G++P +EP+ + T+PIT+APY
Sbjct: 462 -GPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPY 520
Query: 526 SIVFAHIPRFYAPAC 540
SIVF H+ PAC
Sbjct: 521 SIVFVHMRNVVVPAC 535
>AT5G61250.2 | chr5:24632294-24634597 REVERSE LENGTH=540
Length = 539
Score = 543 bits (1400), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/500 (51%), Positives = 348/500 (69%), Gaps = 10/500 (2%)
Query: 50 TDEDFVCATLDWWPPDKCDYGTCSWGLATLLNMDLSNKILLNAVKAFSPLKLRLGGSLQD 109
TDE+F+CATLDWWPP+KC+Y C WG A+L+N++L++ +L A++AF L++R+GGSLQD
Sbjct: 40 TDENFICATLDWWPPEKCNYDQCPWGYASLINLNLASPLLAKAIQAFRTLRIRIGGSLQD 99
Query: 110 VLIYDTGDPRQPCTPFTKNSSAMFGFTQGCLPLHRWDELNAFFQKSGAKIIFGLNALNGR 169
+IYD GD + PCT F K +FGF++GCL + RWDE+N FF +GA + FGLNAL+GR
Sbjct: 100 QVIYDVGDLKTPCTQFKKTDDGLFGFSEGCLYMKRWDEVNHFFNATGAIVTFGLNALHGR 159
Query: 170 VPMSDDSLGGPWNYTNAASFIRYTVSKGYDIHGWELGNELSGSGVGARVDADQYAQDVLA 229
++ + GG W++TN F+ YTVSKGY I WE GNELSGSG+ A V + Y +D++
Sbjct: 160 NKLNGTAWGGDWDHTNTQDFMNYTVSKGYAIDSWEFGNELSGSGIWASVSVELYGKDLIV 219
Query: 230 LKQIIDNSYQGHASKPLVIAPGGFFDAAWFTELISRTKPNQMDVMTHHIYNLGPGVDTHL 289
LK +I N Y+ +KPLV+APGGFF+ W++EL+ + P +DV+THHIYNLGPG D L
Sbjct: 220 LKNVIKNVYKNSRTKPLVVAPGGFFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKL 279
Query: 290 IDKILDPSYLDGEAGTFSSLQGILKSAGTSTVAWVGEAGGAYNSGHHLVTDAFVFSFWYL 349
++KILDP+YL G + F+++ ++ G AWVGEAGGA+NSG V++ F+ SFWYL
Sbjct: 280 VNKILDPNYLSGISELFANVNQTIQEHGPWAAAWVGEAGGAFNSGGRQVSETFINSFWYL 339
Query: 350 DQLGMSSKYDTKTYCRQTLIGGNYGLLNTTTFEPNPDYYSALLWNRLMGTKVLSATFNGT 409
DQLG+SSK++TK YCRQ L+GG YGLL TF PNPDYYSALLW+RLMG +L +
Sbjct: 340 DQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPNPDYYSALLWHRLMGKGILGVQTTAS 399
Query: 410 NKIRAYAHCARDSRGITLLLINLSGNNTNHIYVTSEGVQPYSTKKEGRRRF------GRI 463
+RAY HC++ GIT+LLINLS + T + V S GV+ + +R+ ++
Sbjct: 400 EYLRAYVHCSKRRAGITILLINLSKHTTFTVAV-SNGVKVVLQAESMKRKSFLETIKSKV 458
Query: 464 PGLGEEAQ---LIREEYHLTPKDGSLQSQHVLLNGNVLAPDANGEIPKLEPVQVEGTQPI 520
+G +A L REEYHL+PKDG L+S+ +LLNG L P A G+IPKLEPV+ P+
Sbjct: 459 SWVGNKASDGYLNREEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPVRHGVKSPV 518
Query: 521 TVAPYSIVFAHIPRFYAPAC 540
+ P SI F +P F APAC
Sbjct: 519 YINPLSISFIVLPTFDAPAC 538
>AT5G07830.1 | chr5:2504168-2506567 FORWARD LENGTH=544
Length = 543
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/501 (51%), Positives = 341/501 (68%), Gaps = 11/501 (2%)
Query: 50 TDEDFVCATLDWWPPDKCDYGTCSWGLATLLNMDLSNKILLNAVKAFSPLKLRLGGSLQD 109
TDE+FVCATLDWWP DKC+Y C WG ++++NMDL+ +L A+KAF PL++R+GGSLQD
Sbjct: 43 TDENFVCATLDWWPHDKCNYDQCPWGYSSVINMDLTRPLLTKAIKAFKPLRIRIGGSLQD 102
Query: 110 VLIYDTGDPRQPCTPFTKNSSAMFGFTQGCLPLHRWDELNAFFQKSGAKIIFGLNALNGR 169
+IYD G+ + PC PF K +S +FGF++GCL + RWDELN+F +GA + FGLNAL GR
Sbjct: 103 QVIYDVGNLKTPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRGR 162
Query: 170 VPMSDDSLGGPWNYTNAASFIRYTVSKGYDIHGWELGNELSGSGVGARVDADQYAQDVLA 229
+ + GG W++ N F+ YTVSKGY I WE GNELSGSGVGA V A+ Y +D++
Sbjct: 163 HKLRGKAWGGAWDHINTQDFLNYTVSKGYVIDSWEFGNELSGSGVGASVSAELYGKDLIV 222
Query: 230 LKQIIDNSYQGH-ASKPLVIAPGGFFDAAWFTELISRTKPNQMDVMTHHIYNLGPGVDTH 288
LK +I+ Y+ KP+++APGGF++ W+T+L+ + P+ +DV+THHIYNLG G D
Sbjct: 223 LKDVINKVYKNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDPA 282
Query: 289 LIDKILDPSYLDGEAGTFSSLQGILKSAGTSTVAWVGEAGGAYNSGHHLVTDAFVFSFWY 348
L+ KI+DPSYL + TF + ++ G WVGE+GGAYNSG V+D F+ SFWY
Sbjct: 283 LVKKIMDPSYLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWY 342
Query: 349 LDQLGMSSKYDTKTYCRQTLIGGNYGLLNTTTFEPNPDYYSALLWNRLMGTKVLSATFNG 408
LDQLGMS++++TK YCRQTL+GG YGLL TF PNPDYYSALLW+RLMG VL+ +G
Sbjct: 343 LDQLGMSARHNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTDG 402
Query: 409 TNKIRAYAHCARDSRGITLLLINLSGNNTNHIYVTSEGV----QPYSTKKEG-----RRR 459
++R YAHC++ G+TLLLINLS N ++ S G+ S KK+ +R
Sbjct: 403 PPQLRVYAHCSKGRAGVTLLLINLS-NQSDFTVSVSNGINVVLNAESRKKKSLLDTLKRP 461
Query: 460 FGRIPGLGEEAQLIREEYHLTPKDGSLQSQHVLLNGNVLAPDANGEIPKLEPVQVEGTQP 519
F I + L REEYHLTP++G L+S+ ++LNG L P A G+IP LEPV P
Sbjct: 462 FSWIGSKASDGYLNREEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNSP 521
Query: 520 ITVAPYSIVFAHIPRFYAPAC 540
+ V P S+ F +P F A AC
Sbjct: 522 LNVLPLSMSFIVLPNFDASAC 542
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,253,192
Number of extensions: 534028
Number of successful extensions: 992
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 3
Length of query: 541
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 438
Effective length of database: 8,282,721
Effective search space: 3627831798
Effective search space used: 3627831798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)