Os02g0798700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Neurochondrin family protein.
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Os02g0798700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Neurochondrin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.44 | 0.419 | 8.79 | 0.563 | 0.28 | 0.708 | 0.44 | -0.963 | 0.325 | 20.4 | 78.87 | 1332 | -- | -- |
| 80.24 | 0.417 | 8.79 | 0.487 | 0.282 | 0.653 | 0.443 | -- | 0.308 | 20.5 | 78.74 | 1331 | -- | -- |
| 80.04 | 0.417 | 8.79 | 0.55 | 0.283 | 0.707 | -- | -0.976 | 0.326 | 20.6 | 78.74 | 1319 | -- | -- |
| 80.82 | 0.419 | 8.79 | 0.483 | 0.284 | 0.632 | -- | -- | 0.31 | 20.6 | 78 | 1320 | -- | -- |
| 84.27 | 0.428 | 8.78 | 0.549 | -- | 0.734 | -- | -0.988 | 0.323 | -- | 78.86 | 1363 | -- | -- |
| 85.58 | 0.434 | 8.8 | 0.449 | 0.291 | -- | 0.467 | -- | 0.276 | 19.8 | -- | -- | -- | -- |
| 86.21 | 0.435 | 8.8 | 0.437 | 0.291 | -- | -- | -- | 0.277 | 19.8 | -- | -- | -- | -- |
| 85.08 | 0.43 | 8.79 | 0.469 | -- | 0.674 | -- | -- | 0.305 | -- | 78.22 | 1363 | -- | -- |
| 86.6 | 0.433 | 8.8 | -- | 0.27 | 0.605 | -- | -- | 0.264 | 20.3 | 80.47 | 1377 | -- | -- |
| 90.78 | 0.445 | 8.79 | 0.434 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 91.25 | 0.447 | 8.81 | -- | 0.288 | -- | -- | -- | 0.228 | 19.9 | -- | -- | -- | -- |
| 90.61 | 0.443 | 8.8 | -- | -- | 0.634 | -- | -- | 0.263 | -- | 80.5 | 1385 | -- | -- |
| 95.74 | 0.457 | 8.81 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 8 | 72.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 27 | 73.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 30 | 73.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 60 | 74.01 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 73 | 74.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 12 |
| 125 | 74.48 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 128 | 74.49 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 188 | 74.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 195 | 74.82 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 199 | 74.84 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 13 |
| 240 | 75.11 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 250 | 75.17 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 326 | 75.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 370 | 75.66 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 15 |
| 407 | 75.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 443 | 75.91 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |
| 462 | 75.96 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 481 | 76.00 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 564 | 76.24 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 14 |
| 583 | 76.29 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 7 |
| 651 | 76.41 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 16 |
| 652 | 76.41 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 712 | 76.55 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 722 | 76.60 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 731 | 76.62 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 743 | 76.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 791 | 76.74 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 9 |
| 868 | 76.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 874 | 76.91 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 888 | 76.95 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 930 | 77.03 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 4 |
| 956 | 77.09 | wind | 7 | 10 | < th | dose independent | rect. | 9 | 20 |
| 998 | 77.15 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 3 |