Os02g0796900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L39.
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Os02g0796900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L39.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.93 | 0.428 | 12.2 | 0.365 | 0.887 | 0.393 | 0.284 | -1.12 | -0.178 | 17.7 | 19.73 | 4154 | -- | -- |
| 85.31 | 0.43 | 12.2 | 0.52 | 0.864 | 0.631 | 0.352 | -- | -0.121 | 17.7 | 18.89 | 7125 | -- | -- |
| 82.34 | 0.423 | 12.2 | 0.381 | 0.894 | 0.415 | -- | -1.15 | -0.169 | 17.7 | 19.8 | 2894 | -- | -- |
| 83.85 | 0.426 | 12.2 | 0.569 | 0.904 | 0.698 | -- | -- | -0.0989 | 17.7 | 18.7 | 2912 | -- | -- |
| 123.22 | 0.517 | 12.2 | 0.392 | -- | 0.405 | -- | -1.03 | -0.178 | -- | 19.7 | 3151 | -- | -- |
| 91.14 | 0.448 | 12.2 | 0.894 | 0.872 | -- | 0.401 | -- | 0.018 | 17.8 | -- | -- | -- | -- |
| 91.54 | 0.448 | 12.2 | 0.891 | 0.874 | -- | -- | -- | 0.0197 | 17.8 | -- | -- | -- | -- |
| 124.38 | 0.519 | 12.2 | 0.521 | -- | 0.66 | -- | -- | -0.14 | -- | 18.9 | 3230 | -- | -- |
| 85.97 | 0.432 | 12.2 | -- | 0.844 | 0.892 | -- | -- | -0.264 | 17.6 | 18.61 | 21736 | -- | -- |
| 131.16 | 0.535 | 12.2 | 0.864 | -- | -- | -- | -- | -0.000953 | -- | -- | -- | -- | -- |
| 112.46 | 0.496 | 12.2 | -- | 0.86 | -- | -- | -- | -0.0796 | 17.8 | -- | -- | -- | -- |
| 125.77 | 0.522 | 12.2 | -- | -- | 0.855 | -- | -- | -0.247 | -- | 15.57 | 47520 | -- | -- |
| 150.84 | 0.573 | 12.2 | -- | -- | -- | -- | -- | -0.0968 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.85 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 5 | 77.94 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 23 | 79.51 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 27 | 79.55 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 28 | 79.70 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 30 | 79.78 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 42 | 80.14 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 43 | 80.15 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 61 | 80.80 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 64 | 80.87 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 8 |
| 71 | 81.11 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 76 | 81.23 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 77 | 81.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 87 | 81.32 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 88 | 81.33 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 104 | 81.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 109 | 81.53 | wind | 3.0 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 112 | 81.55 | wind | 3.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 113 | 81.58 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 117 | 81.59 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 118 | 81.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 119 | 81.60 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 127 | 81.67 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 128 | 81.67 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 133 | 81.68 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 9 |
| 134 | 81.68 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 136 | 81.69 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 165 | 81.80 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 167 | 81.81 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 172 | 81.81 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 181 | 81.85 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 195 | 81.88 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 218 | 81.95 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 234 | 82.01 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 248 | 82.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 261 | 82.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 267 | 82.09 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 288 | 82.13 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 347 | 82.27 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 362 | 82.31 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 365 | 82.31 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 401 | 82.37 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 445 | 82.45 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 480 | 82.49 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 505 | 82.53 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 506 | 82.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 512 | 82.54 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 529 | 82.57 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 14 |
| 533 | 82.57 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 14 |
| 534 | 82.57 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 18 |
| 537 | 82.58 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 547 | 82.59 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 556 | 82.60 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 566 | 82.61 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 596 | 82.65 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 597 | 82.65 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 609 | 82.67 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 14 |
| 611 | 82.67 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 636 | 82.72 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 674 | 82.76 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 681 | 82.77 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 696 | 82.79 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 698 | 82.79 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 754 | 82.86 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 777 | 82.89 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 778 | 82.89 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 804 | 82.92 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 22 |
| 838 | 82.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 849 | 82.95 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 854 | 82.95 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 856 | 82.95 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 859 | 82.96 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 890 | 82.98 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 891 | 82.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 900 | 82.98 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 907 | 82.99 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 908 | 82.99 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 925 | 83.00 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 926 | 83.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 927 | 83.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 929 | 83.00 | wind | 7.0 | 30 | < th | dose independent | rect. | 23 | 10 |
| 933 | 83.00 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 935 | 83.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 959 | 83.01 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 960 | 83.02 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 962 | 83.02 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 965 | 83.02 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 967 | 83.02 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 974 | 83.02 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 976 | 83.02 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 996 | 83.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 7 |