BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0796900 Os02g0796900|D29725
         (50 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31985.1  | chr4:15469931-15470366 FORWARD LENGTH=52            94   1e-20
AT3G02190.1  | chr3:406005-406342 REVERSE LENGTH=52                91   1e-19
AT2G25210.1  | chr2:10740157-10740379 FORWARD LENGTH=45            83   2e-17

>AT4G31985.1 | chr4:15469931-15470366 FORWARD LENGTH=52
          Length = 51

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 48/50 (96%)

Query: 1  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 50
          PSHK+F IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51



>AT3G02190.1 | chr3:406005-406342 REVERSE LENGTH=52
          Length = 51

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 46/50 (92%)

Query: 1  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 50
          PSHK+F IKKKL KKMRQNRPIP WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51



>AT2G25210.1 | chr2:10740157-10740379 FORWARD LENGTH=45
          Length = 44

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 8  IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 50
          IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.137    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,047,835
Number of extensions: 25681
Number of successful extensions: 67
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 3
Length of query: 50
Length of database: 11,106,569
Length adjustment: 24
Effective length of query: 26
Effective length of database: 10,448,585
Effective search space: 271663210
Effective search space used: 271663210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)