Os02g0796400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0796400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.57 | 0.518 | 8.35 | -0.0516 | 1.66 | -0.534 | 0.323 | 0.553 | -0.365 | 17.3 | 10 | 10 | -- | -- |
| 124.28 | 0.523 | 8.36 | -0.104 | 1.67 | -0.539 | 0.223 | -- | -0.377 | 17.3 | 10 | 10 | -- | -- |
| 122.67 | 0.52 | 8.35 | -0.0634 | 1.68 | -0.535 | -- | 0.52 | -0.366 | 17.3 | 10 | 10 | -- | -- |
| 124.4 | 0.523 | 8.36 | -0.104 | 1.67 | -0.531 | -- | -- | -0.376 | 17.3 | 10 | 10 | -- | -- |
| 187.55 | 0.638 | 8.39 | 0.457 | -- | -1.34 | -- | 1.54 | -0.187 | -- | 4.8 | 493 | -- | -- |
| 134.2 | 0.543 | 8.35 | -0.134 | 1.86 | -- | -0.0074 | -- | -0.406 | 16.2 | -- | -- | -- | -- |
| 134.2 | 0.543 | 8.35 | -0.134 | 1.86 | -- | -- | -- | -0.406 | 16.2 | -- | -- | -- | -- |
| 140.59 | 0.552 | 8.32 | -0.177 | -- | -1.81 | -- | -- | -0.439 | -- | 0.82 | 547 | -- | -- |
| 124.68 | 0.523 | 8.35 | -- | 1.67 | -0.535 | -- | -- | -0.364 | 17.3 | 10 | 10 | -- | -- |
| 321.35 | 0.838 | 8.34 | -0.209 | -- | -- | -- | -- | -0.455 | -- | -- | -- | -- | -- |
| 134.68 | 0.543 | 8.35 | -- | 1.86 | -- | -- | -- | -0.391 | 16.2 | -- | -- | -- | -- |
| 141.78 | 0.555 | 8.32 | -- | -- | -1.82 | -- | -- | -0.465 | -- | 1.67 | 541 | -- | -- |
| 322.51 | 0.838 | 8.34 | -- | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.03 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 2 | 113.16 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 7 | 113.95 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 12 | 114.79 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 18 | 115.09 | wind | 5.0 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 19 | 115.11 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 23 | 115.30 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 25 | 115.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 29 | 115.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 33 | 115.60 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 34 | 115.68 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 36 | 115.70 | wind | 7.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 47 | 115.91 | wind | 7.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 58 | 116.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 64 | 116.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 70 | 116.38 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 72 | 116.40 | wind | 3.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 73 | 116.43 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 77 | 116.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 78 | 116.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 80 | 116.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 81 | 116.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 84 | 116.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 19 |
| 85 | 116.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 19 |
| 90 | 116.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 100 | 116.69 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 103 | 116.73 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 120 | 116.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 122 | 116.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 124 | 116.88 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 125 | 116.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 128 | 116.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 129 | 116.88 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 131 | 116.88 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 134 | 116.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 135 | 116.88 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 137 | 116.89 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 142 | 116.91 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 20 |
| 147 | 116.94 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 18 |
| 148 | 116.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 157 | 117.02 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 195 | 117.16 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 6 |
| 199 | 117.16 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 200 | 117.17 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 18 |
| 201 | 117.17 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 214 | 117.26 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 227 | 117.27 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 19 |
| 228 | 117.29 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 230 | 117.30 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 233 | 117.32 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 235 | 117.32 | humidity | 70.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 240 | 117.36 | radiation | 40.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 255 | 117.41 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 257 | 117.41 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 258 | 117.41 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 260 | 117.41 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 261 | 117.41 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 263 | 117.41 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 269 | 117.44 | temperature | 15.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 270 | 117.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 290 | 117.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 295 | 117.59 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 308 | 117.63 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 311 | 117.64 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 319 | 117.67 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 340 | 117.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 349 | 117.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 350 | 117.77 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 414 | 117.91 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 422 | 117.93 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 434 | 118.00 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 439 | 118.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 440 | 118.01 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 446 | 118.06 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 452 | 118.07 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 453 | 118.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 456 | 118.07 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 458 | 118.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 459 | 118.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 469 | 118.13 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 16 |
| 472 | 118.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 473 | 118.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 474 | 118.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 479 | 118.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 490 | 118.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 493 | 118.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 494 | 118.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 495 | 118.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 498 | 118.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 499 | 118.24 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 501 | 118.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 516 | 118.31 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 523 | 118.35 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 525 | 118.36 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 547 | 118.42 | radiation | 10.0 | 90 | < th | dose independent | rect. | 2 | 9 |
| 559 | 118.44 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 635 | 118.56 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 655 | 118.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 684 | 118.66 | temperature | 30.0 | 90 | < th | dose independent | rect. | 15 | 16 |
| 723 | 118.77 | radiation | 40.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 728 | 118.79 | temperature | 15.0 | 10 | > th | dose independent | rect. | 15 | 16 |
| 757 | 118.83 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 19 |
| 784 | 118.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 802 | 118.87 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 859 | 119.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 863 | 119.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 9 |
| 864 | 119.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 14 |
| 868 | 119.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 870 | 119.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 896 | 119.05 | humidity | 60.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 899 | 119.05 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 903 | 119.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 906 | 119.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 917 | 119.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 921 | 119.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 950 | 119.21 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 951 | 119.21 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 19 |
| 960 | 119.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 969 | 119.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 10 |
| 973 | 119.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 974 | 119.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 10 |
| 976 | 119.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 18 |