Os02g0794400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Initiation factor 3 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0794400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Initiation factor 3 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.89 | 0.332 | 12.3 | -1.24 | 0.558 | 0.895 | 0.348 | 0.975 | -0.456 | 1.27 | 23.16 | 9 | -- | -- |
| 50.39 | 0.331 | 12.3 | -1.36 | 0.56 | 0.952 | 0.194 | -- | -0.494 | 1.27 | 23.3 | 10 | -- | -- |
| 50.26 | 0.333 | 12.3 | -1.3 | 0.557 | 0.917 | -- | 0.587 | -0.471 | 1.28 | 23.2 | 10 | -- | -- |
| 50.45 | 0.331 | 12.3 | -1.39 | 0.568 | 0.959 | -- | -- | -0.5 | 1.34 | 23.23 | 10 | -- | -- |
| 57.72 | 0.354 | 12.3 | -1.3 | -- | 0.57 | -- | 0.405 | -0.454 | -- | 21.55 | 2268 | -- | -- |
| 64.78 | 0.377 | 12.3 | -1.21 | 0.257 | -- | 0.118 | -- | -0.361 | 23 | -- | -- | -- | -- |
| 64.84 | 0.377 | 12.3 | -1.21 | 0.256 | -- | -- | -- | -0.361 | 23.1 | -- | -- | -- | -- |
| 57.81 | 0.354 | 12.3 | -1.46 | -- | 0.628 | -- | -- | -0.484 | -- | 21.41 | 3763 | -- | -- |
| 97.47 | 0.46 | 12.3 | -- | 0.419 | 0.64 | -- | -- | -0.275 | 0.809 | 25.29 | 4 | -- | -- |
| 68.92 | 0.388 | 12.3 | -1.21 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 103.58 | 0.476 | 12.3 | -- | 0.246 | -- | -- | -- | -0.226 | 22.8 | -- | -- | -- | -- |
| 103.42 | 0.474 | 12.3 | -- | -- | 0.656 | -- | -- | -0.197 | -- | 30 | 2 | -- | -- |
| 107.31 | 0.484 | 12.3 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 42.73 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 42.76 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 14 | 43.87 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 37 | 44.90 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 53 | 45.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 174 | 46.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 227 | 47.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 237 | 47.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 244 | 47.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 262 | 47.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 342 | 48.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 399 | 48.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 482 | 48.82 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 501 | 48.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 635 | 49.43 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 14 |
| 658 | 49.51 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 702 | 49.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 738 | 49.70 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 14 |
| 779 | 49.81 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 809 | 49.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 929 | 50.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 934 | 50.24 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 1000 | 50.42 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |