BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0794400 Os02g0794400|AK065845
         (200 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24060.1  | chr2:10229453-10231390 FORWARD LENGTH=313          168   2e-42
AT4G30690.1  | chr4:14960742-14962328 FORWARD LENGTH=282          167   4e-42

>AT2G24060.1 | chr2:10229453-10231390 FORWARD LENGTH=313
          Length = 312

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 5/162 (3%)

Query: 1   MVGVVSVSEAVQIADENDLILAILSLDGDPPVLRLFXXXXXXXXXXXXXXXXXXXXXXSV 60
           M+G+VS  EAV++AD+ +L L ILS D DPPV+++                         
Sbjct: 109 MLGLVSKDEAVRMADDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQ-----KK 163

Query: 61  AKRMGLKELKMGYNIDIHDYSVRLKAARKFLKAGDKVKIMVNLKGRENLYKKQAIELLRR 120
             RM LKELKMGYNID HDYSVRL+AA+KFL+ GDKVK++V++KGREN ++  AIELLRR
Sbjct: 164 TTRMDLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRR 223

Query: 121 FQNDVGEMATEESKNFQERNIYLVLVPNKIAIQKEQDELNKK 162
           FQ ++GE+ATEESKNF++RN++++LVPNK  I+K Q+   +K
Sbjct: 224 FQTEIGELATEESKNFRDRNMFIILVPNKEMIRKPQEPPTRK 265



>AT4G30690.1 | chr4:14960742-14962328 FORWARD LENGTH=282
          Length = 281

 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 111/157 (70%), Gaps = 5/157 (3%)

Query: 1   MVGVVSVSEAVQIADENDLILAILSLDGDPPVLRLFXXXXXXXXXXXXXXXXXXXXXXSV 60
           M+G+VS  EAV+ A++ +L L ILS D DPPV+R+                         
Sbjct: 105 MIGLVSKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQ-----KK 159

Query: 61  AKRMGLKELKMGYNIDIHDYSVRLKAARKFLKAGDKVKIMVNLKGRENLYKKQAIELLRR 120
             RM LKELKMGYNID HDYSVR++AARKFL+ GDKVK++VN+KGREN ++  AIELLRR
Sbjct: 160 TTRMDLKELKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRR 219

Query: 121 FQNDVGEMATEESKNFQERNIYLVLVPNKIAIQKEQD 157
           FQ ++GE+ TEESKNF++RN+++VLVPNK  I+K Q+
Sbjct: 220 FQTEIGELGTEESKNFRDRNLFIVLVPNKEVIRKVQE 256



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,098,531
Number of extensions: 95309
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)