Os02g0793100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0793100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53 | 0.342 | 7.63 | 1.22 | 0.509 | 0.799 | -0.664 | 0.861 | 0.316 | 20.9 | 20.5 | 1977 | -- | -- |
| 54.47 | 0.344 | 7.65 | 1.09 | 0.483 | 0.691 | -0.612 | -- | 0.308 | 20.8 | 20.6 | 2116 | -- | -- |
| 54.3 | 0.343 | 7.63 | 1.23 | 0.518 | 0.783 | -- | 0.759 | 0.313 | 20.5 | 20.6 | 2006 | -- | -- |
| 55.18 | 0.346 | 7.66 | 1.07 | 0.513 | 0.688 | -- | -- | 0.279 | 20.3 | 20.6 | 2269 | -- | -- |
| 65.71 | 0.378 | 7.63 | 1.19 | -- | 0.755 | -- | 0.279 | 0.271 | -- | 21 | 645 | -- | -- |
| 65.14 | 0.378 | 7.62 | 1.38 | 0.545 | -- | -0.541 | -- | 0.447 | 20.9 | -- | -- | -- | -- |
| 66.01 | 0.38 | 7.62 | 1.4 | 0.553 | -- | -- | -- | 0.449 | 20.6 | -- | -- | -- | -- |
| 65.56 | 0.377 | 7.64 | 1.13 | -- | 0.734 | -- | -- | 0.276 | -- | 20.76 | 636 | -- | -- |
| 73.53 | 0.399 | 7.7 | -- | 0.446 | 1.28 | -- | -- | 0.132 | 20.7 | 19.33 | 7998 | -- | -- |
| 83.18 | 0.426 | 7.6 | 1.4 | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
| 117.6 | 0.507 | 7.65 | -- | 0.549 | -- | -- | -- | 0.293 | 20.7 | -- | -- | -- | -- |
| 83 | 0.424 | 7.7 | -- | -- | 1.15 | -- | -- | 0.0177 | -- | 18.36 | 47520 | -- | -- |
| 134.66 | 0.542 | 7.64 | -- | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.52 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 8 | 52.23 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 18 | 52.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 30 | 53.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 33 | 53.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 36 | 53.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 37 | 53.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 38 | 53.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 56 | 53.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 67 | 53.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 87 | 53.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 103 | 53.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 117 | 53.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 133 | 53.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 137 | 53.81 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 215 | 53.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 216 | 53.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 223 | 53.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 264 | 53.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 268 | 54.01 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 289 | 54.03 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 21 |
| 292 | 54.04 | temperature | 20 | 720 | > th | dose independent | sin | 20 | NA |
| 320 | 54.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 341 | 54.08 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 401 | 54.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 408 | 54.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 454 | 54.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 463 | 54.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 494 | 54.24 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 496 | 54.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 575 | 54.31 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 581 | 54.31 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 583 | 54.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 627 | 54.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 629 | 54.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 638 | 54.38 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 734 | 54.50 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 740 | 54.51 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 14 |
| 779 | 54.55 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 811 | 54.58 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 916 | 54.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 977 | 54.75 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |