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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0785000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 31 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0208) R2 : 0.000723
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0251 (0.0437) R2dN8 : 0.000934 R2N8 : 0.000723
σ : 0.391
deviance : 70.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63 0.373 3.31 0.176 0.252 0.236 -0.44 1.27 -0.0524 6.38 91 5900 -- --
65.06 0.376 3.3 0.0907 0.288 0.309 -0.466 -- -0.0964 6.27 97.06 4785 -- --
63.47 0.371 3.3 0.175 0.251 0.228 -- 1.3 -0.0475 6.55 90.99 5943 -- --
65.58 0.377 3.3 0.0851 0.286 0.304 -- -- -0.0928 6.49 150.6 4795 -- --
66.7 0.38 3.31 0.177 -- 0.232 -- 1.26 -0.0448 -- 91 5832 -- --
66.25 0.382 3.29 0.0725 0.251 -- -0.462 -- -0.0239 6.31 -- -- -- --
66.76 0.383 3.29 0.0675 0.249 -- -- -- -0.0221 6.56 -- -- -- --
68.9 0.387 3.31 0.0943 -- 0.282 -- -- -0.0798 -- 98.33 5643 -- --
65.77 0.378 3.3 -- 0.287 0.295 -- -- -0.0988 6.48 136 4790 -- --
70 0.391 3.29 0.0736 -- -- -- -- -0.0169 -- -- -- -- --
66.88 0.383 3.29 -- 0.25 -- -- -- -0.0296 6.54 -- -- -- --
69.14 0.387 3.31 -- -- 0.269 -- -- -0.0873 -- 106.7 5643 -- --
70.14 0.391 3.29 -- -- -- -- -- -0.0251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.70 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 57.83 atmosphere 1005.0 90 > th dose dependent rect. 2 1
3 57.98 temperature 25.0 90 > th dose dependent rect. 1 3
4 58.00 radiation 1.0 43200 < th dose dependent rect. 3 1
9 58.41 humidity 80.0 10 < th dose independent rect. 6 2
10 58.41 radiation 1.0 4320 < th dose dependent rect. 3 1
12 58.43 temperature 25.0 90 > th dose independent rect. 1 3
17 58.48 atmosphere 1005.0 10 > th dose dependent rect. 2 2
26 58.52 wind 9.0 1440 < th dose independent rect. 3 1
27 58.52 temperature 10.0 1440 > th dose independent rect. 3 1
30 58.52 temperature 30.0 1440 < th dose independent rect. 3 1
34 58.52 humidity 50.0 1440 > th dose independent rect. 3 1
43 58.52 atmosphere 995.0 1440 > th dose independent rect. 3 1
44 58.52 radiation 1.0 1440 < th dose independent rect. 3 1
64 58.52 temperature 10.0 1440 > th dose independent rect. 4 23
72 58.54 temperature 25.0 90 > th dose independent rect. 1 1
73 58.55 radiation 10.0 30 > th dose independent rect. 7 1
81 58.67 atmosphere 1005.0 30 > th dose independent rect. 2 1
85 58.69 wind 3.0 30 < th dose independent rect. 2 1
89 58.71 wind 3.0 30 < th dose dependent rect. 2 1
97 58.75 temperature 10.0 30 > th dose independent rect. 2 1
99 58.75 temperature 30.0 30 < th dose independent rect. 2 1
100 58.75 humidity 50.0 30 > th dose independent rect. 2 1
103 58.75 humidity 90.0 30 > th dose independent rect. 2 1
105 58.75 atmosphere 1010.0 30 < th dose independent rect. 2 1
107 58.75 radiation 1.0 30 < th dose independent rect. 2 1
112 58.75 precipitation 0.1 30 < th dose independent rect. 2 1
115 58.75 temperature 10.0 30 > th dose independent rect. 3 23
116 58.75 humidity 50.0 30 > th dose dependent rect. 2 1
120 58.75 radiation 1.0 30 < th dose dependent rect. 2 1
125 58.75 precipitation 0.1 30 < th dose dependent rect. 2 1
130 58.86 atmosphere 1015.0 30 < th dose dependent rect. 2 1
133 58.89 humidity 80.0 10 < th dose independent rect. 23 9
134 58.91 wind 1.0 30 > th dose independent rect. 2 1
137 58.93 temperature 30.0 30 < th dose dependent rect. 2 1
149 59.10 precipitation 0.1 30 < th dose independent rect. 3 23
152 59.10 precipitation 0.1 30 < th dose dependent rect. 3 23
213 59.64 wind 9.0 30 < th dose independent rect. 3 23
227 60.04 radiation 10.0 10 > th dose independent rect. 16 16
233 60.20 humidity 50.0 30 > th dose independent rect. 3 23
257 60.74 temperature 25.0 30 > th dose independent rect. 7 1
274 61.11 humidity 90.0 90 < th dose independent rect. 2 1
318 61.43 atmosphere 995.0 720 > th dose independent rect. 23 16
337 61.89 humidity 80.0 14400 < th dose dependent rect. 4 5
342 61.94 humidity 90.0 90 < th dose independent rect. 2 3
348 62.05 temperature 30.0 30 < th dose independent rect. 3 23
352 62.09 precipitation 0.1 720 < th dose independent rect. 15 8
354 62.09 precipitation 0.1 720 < th dose dependent rect. 15 8
366 62.16 humidity 90.0 10 < th dose dependent rect. 7 1
371 62.21 wind 3.0 30 < th dose dependent rect. 2 6
380 62.27 wind 3.0 30 < th dose dependent rect. 2 3
395 62.39 wind 1.0 10 > th dose independent rect. 8 23
397 62.40 humidity 70.0 14400 > th dose independent rect. 8 1
400 62.41 temperature 10.0 720 > th dose independent rect. 15 8
401 62.41 temperature 10.0 720 > th dose independent rect. 23 16
403 62.42 atmosphere 1000.0 30 > th dose independent rect. 8 23
410 62.45 atmosphere 1000.0 720 > th dose independent rect. 3 8
416 62.47 humidity 90.0 90 < th dose dependent rect. 1 7
417 62.48 atmosphere 1005.0 30 > th dose independent rect. 7 1
426 62.53 radiation 10.0 30 < th dose dependent rect. 3 23
429 62.56 humidity 80.0 14400 < th dose dependent rect. 23 11
435 62.58 humidity 70.0 14400 > th dose independent rect. 4 5
436 62.58 humidity 70.0 14400 > th dose independent rect. 24 9
441 62.59 humidity 70.0 14400 > th dose independent rect. 6 3
448 62.60 precipitation 0.1 720 < th dose independent rect. 11 16
451 62.60 precipitation 0.1 720 < th dose dependent rect. 11 16
457 62.62 temperature 20.0 30 > th dose dependent rect. 2 6
458 62.63 atmosphere 1000.0 30 > th dose independent rect. 8 18
461 62.64 temperature 10.0 720 > th dose independent rect. 3 8
463 62.64 temperature 10.0 720 > th dose independent rect. 11 16
464 62.65 humidity 70.0 14400 < th dose independent rect. 8 1
469 62.66 radiation 10.0 30 < th dose independent rect. 3 23
474 62.69 humidity 50.0 720 > th dose independent rect. 3 8
476 62.70 atmosphere 1005.0 30 > th dose independent rect. 2 6
484 62.72 humidity 70.0 14400 < th dose independent rect. 7 3
509 62.74 atmosphere 1000.0 30 > th dose dependent rect. 2 6
524 62.81 wind 9.0 720 < th dose independent rect. 3 8
535 62.84 atmosphere 995.0 30 > th dose dependent rect. 3 23
568 62.94 atmosphere 995.0 720 > th dose independent rect. 7 8
570 62.94 atmosphere 1015.0 30 < th dose independent rect. 3 23
584 62.97 wind 5.0 10 < th dose dependent rect. 7 1
586 62.98 humidity 50.0 4320 > th dose dependent rect. 11 2
588 62.99 temperature 20.0 10 > th dose dependent rect. 7 1
594 63.01 wind 3.0 30 < th dose independent rect. 2 6
597 63.02 humidity 60.0 14400 < th dose independent rect. 11 1
602 63.03 wind 5.0 30 < th dose independent rect. 7 1
607 63.05 radiation 1.0 10 > th dose dependent rect. 7 1
608 63.05 humidity 90.0 4320 < th dose dependent rect. 11 2
610 63.06 humidity 70.0 4320 > th dose independent rect. 10 2
622 63.09 humidity 80.0 4320 < th dose independent rect. 7 7
623 63.09 humidity 50.0 14400 > th dose dependent rect. 8 1
626 63.10 wind 1.0 30 > th dose independent rect. 7 1
627 63.10 humidity 80.0 4320 > th dose independent rect. 6 7
633 63.10 humidity 50.0 4320 > th dose dependent rect. 3 12
657 63.13 humidity 70.0 4320 > th dose independent rect. 4 11
665 63.13 humidity 90.0 4320 < th dose dependent rect. 3 12
667 63.13 radiation 10.0 10 < th dose dependent rect. 5 21
669 63.14 wind 9.0 720 < th dose independent rect. 15 8
709 63.16 humidity 50.0 4320 > th dose dependent rect. 23 16
710 63.16 humidity 90.0 4320 < th dose dependent rect. 23 17
719 63.17 wind 3.0 30 < th dose dependent rect. 2 11
762 63.20 humidity 70.0 4320 > th dose independent sin 4 NA
769 63.20 atmosphere 1000.0 10 > th dose independent rect. 16 10
799 63.21 humidity 50.0 4320 > th dose dependent sin 4 NA
800 63.21 wind 1.0 14400 < th dose dependent rect. 2 1
850 63.23 humidity 90.0 720 < th dose independent rect. 1 3
867 63.23 humidity 90.0 4320 < th dose dependent sin 4 NA
870 63.23 humidity 80.0 4320 < th dose dependent rect. 14 1
903 63.24 wind 1.0 10 < th dose independent rect. 11 16
919 63.24 wind 1.0 14400 < th dose dependent rect. 6 1