BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0785000 Os02g0785000|AK103670
         (328 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57500.1  | chr5:23286406-23287525 REVERSE LENGTH=319          287   5e-78

>AT5G57500.1 | chr5:23286406-23287525 REVERSE LENGTH=319
          Length = 318

 Score =  287 bits (735), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 138/255 (54%), Positives = 177/255 (69%), Gaps = 10/255 (3%)

Query: 78  DFRLLIGVLTRADNYERRHLLRMVYGLQLAAGDLTAHVDVRFVFCRLYKDDQRVLVPLEI 137
           + R+LIG+LT  D Y RRH LRM+YG Q     +   VDV+FVFC L K+DQ+VLV LEI
Sbjct: 68  EIRILIGILTLPDQYSRRHFLRMIYGTQNVPDGV--KVDVKFVFCNLTKEDQKVLVALEI 125

Query: 138 LRHGDIIVLDECEENLNGGKTYAFFSAAARLYADD-----PYDYVMKADDDIFLRLPRLL 192
           +R+ DII+L+ C EN+N GKTY +FS+   ++ +      PY YVMKADDD ++RL  L+
Sbjct: 126 MRYDDIIILN-CNENMNKGKTYTYFSSLPDIFNETDAQKPPYHYVMKADDDTYIRLESLV 184

Query: 193 ASLGAMPREDAYYGATIPCGSMDPFREYMSGMAYALSWDVVEWVATSDVPRNRTVGPEDR 252
           ASL  +PRED YYG  IPC SMDPF  YMSGM Y +SWD+  W+  S++P+    GPED+
Sbjct: 185 ASLRPLPREDLYYGYVIPCPSMDPFVHYMSGMGYLVSWDIAVWLKDSEIPKKHLEGPEDK 244

Query: 253 MTGQWLRLGGRGKNRFNAKPAMYDYPLPAPVDKCSHEFIPDTIAVHRLKDNPRWAETLKY 312
           + G W+R G RGKNRFNAK +MY++  P P  +C+HE  PDTIAVH LK+  +W  TL Y
Sbjct: 245 VFGDWIREGRRGKNRFNAKWSMYNF--PEPPTRCTHELWPDTIAVHLLKNQEKWIRTLNY 302

Query: 313 FNFTKGLEPSKFYKI 327
           FN T  L+PSK Y I
Sbjct: 303 FNVTSNLKPSKLYHI 317



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,018,355
Number of extensions: 295634
Number of successful extensions: 522
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)