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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0781500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0332) R2 : 0.218
β1 : -0.131 (0.111) R2dD : 0.00293 R2D : 0.00502
β2 : -- (--) R2dC : -- R2C : --
β3 : 14.9 (2.09) R2dE : 4.09 R2E : -2.73
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 33.8 (5.59) R2dD*E : 2.95 R2D*E : -3.9
γ1 : 0.136 (0.0599) R2dN8 : 0.0119 R2N8 : -0.0197
σ : 0.523
deviance : 126.14
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.101
memory length : 269
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.09
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.66 0.525 3.26 -0.128 0.153 14.9 0.0307 33.9 0.138 12.4 2.059 269 4.08 1.1
292.72 0.797 3.23 -0.1 0.454 10.1 2.33 -- -0.211 22.4 4.263 85 3.94 1.19
124.66 0.52 3.26 -0.127 0.153 14.9 -- 33.9 0.138 12.4 2.056 269 4.08 1.1
222.97 0.695 3.06 0.467 0.207 9.61 -- -- 0.451 20.9 5.926 181 4.29 0.834
126.14 0.523 3.26 -0.131 -- 14.9 -- 33.8 0.136 -- 2.101 269 4.09 1.1
150.57 0.575 3.16 -0.502 0.171 -- -0.13 -- 0.105 10.5 -- -- -- --
150.63 0.575 3.16 -0.507 0.171 -- -- -- 0.105 10.9 -- -- -- --
216.35 0.685 3.06 0.303 -- 9.6 -- -- 0.456 -- 6.037 181 4.28 0.854
191.4 0.644 3.07 -- 0.129 8.26 -- -- 0.503 7.18 6.565 183 4.27 0.867
152.45 0.577 3.17 -0.51 -- -- -- -- 0.103 -- -- -- -- --
157.39 0.587 3.15 -- 0.176 -- -- -- 0.161 11.1 -- -- -- --
167.54 0.603 3.04 -- -- 6.18 -- -- 0.595 -- 8.39 183 4.3 0.834
159.32 0.589 3.15 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.07 radiation 1.0 270 > th dose independent rect. 4 1
11 126.07 radiation 1.0 270 > th dose dependent rect. 4 1
21 138.16 humidity 80.0 720 < th dose independent rect. 23 3
22 138.47 humidity 80.0 720 < th dose dependent rect. 23 3
23 140.08 wind 1.0 4320 > th dose independent rect. 1 5
27 140.64 wind 9.0 1440 > th dose dependent rect. 18 1
30 140.72 radiation 1.0 1440 < th dose dependent rect. 21 8
32 140.73 atmosphere 1005.0 90 > th dose independent rect. 5 21
35 140.76 humidity 90.0 10 < th dose independent rect. 21 12
38 140.82 wind 9.0 1440 > th dose independent rect. 18 1
42 140.87 atmosphere 1000.0 90 > th dose dependent rect. 5 21
44 140.91 humidity 90.0 10 < th dose independent rect. 19 14
45 140.93 wind 1.0 4320 < th dose independent rect. 1 5
46 140.93 atmosphere 995.0 270 > th dose dependent rect. 4 19
52 141.02 wind 1.0 10 < th dose dependent rect. 5 5
62 141.15 atmosphere 1000.0 90 > th dose dependent rect. 6 17
63 141.16 atmosphere 1010.0 90 < th dose dependent rect. 9 22
64 141.17 humidity 80.0 720 > th dose independent rect. 23 6
86 141.32 radiation 30.0 1440 < th dose dependent rect. 18 11
97 141.42 wind 1.0 720 > th dose independent rect. 11 15
102 141.45 humidity 80.0 720 < th dose independent rect. 21 10
108 141.47 radiation 1.0 1440 < th dose dependent rect. 4 1
118 141.54 humidity 90.0 10 < th dose independent sin 9 NA
119 141.54 humidity 90.0 720 < th dose dependent rect. 21 2
138 141.65 humidity 80.0 720 < th dose dependent rect. 22 8
141 141.66 humidity 80.0 720 < th dose dependent rect. 22 6
172 141.82 atmosphere 1015.0 30 < th dose dependent rect. 23 23
178 141.86 humidity 60.0 1440 > th dose independent rect. 3 6
187 141.90 humidity 80.0 720 < th dose independent rect. 21 5
190 141.91 humidity 90.0 4320 < th dose independent rect. 4 2
196 141.93 humidity 80.0 720 < th dose independent rect. 21 3
211 141.99 humidity 60.0 1440 > th dose independent rect. 1 8
215 142.00 radiation 40.0 4320 < th dose independent rect. 15 19
219 142.01 wind 1.0 4320 < th dose dependent rect. 2 4
220 142.01 atmosphere 1000.0 10 > th dose dependent rect. 7 17
235 142.06 wind 3.0 720 < th dose dependent rect. 23 2
236 142.06 radiation 30.0 4320 > th dose dependent rect. 15 18
243 142.09 atmosphere 1005.0 90 > th dose independent rect. 6 17
250 142.11 temperature 25.0 720 > th dose independent rect. 17 18
254 142.12 wind 1.0 10 < th dose independent rect. 5 5
268 142.17 temperature 20.0 720 > th dose dependent rect. 17 18
270 142.18 radiation 30.0 4320 > th dose dependent rect. 13 21
273 142.19 radiation 30.0 4320 > th dose dependent rect. 15 1
286 142.23 temperature 25.0 4320 < th dose independent rect. 17 1
296 142.26 radiation 20.0 1440 < th dose dependent rect. 18 1
301 142.27 temperature 25.0 4320 > th dose independent rect. 17 1
335 142.32 temperature 20.0 1440 > th dose dependent rect. 4 1
340 142.33 humidity 70.0 1440 < th dose independent rect. 16 1
347 142.34 humidity 60.0 1440 < th dose dependent rect. 8 1
362 142.34 atmosphere 1010.0 30 < th dose dependent rect. 13 23
363 142.35 radiation 30.0 4320 < th dose independent rect. 8 2
371 142.36 temperature 25.0 1440 < th dose independent rect. 23 12
373 142.36 temperature 20.0 270 > th dose dependent rect. 23 7
383 142.37 humidity 60.0 1440 < th dose independent rect. 8 1
403 142.38 temperature 25.0 720 < th dose independent rect. 20 14
413 142.41 radiation 40.0 4320 < th dose independent sin 12 NA
415 142.41 temperature 25.0 1440 < th dose independent rect. 17 18
419 142.42 radiation 30.0 4320 > th dose independent rect. 15 18
423 142.43 radiation 10.0 1440 < th dose dependent rect. 18 4
424 142.43 atmosphere 1000.0 90 > th dose dependent rect. 20 20
428 142.44 temperature 20.0 270 > th dose dependent rect. 23 20
432 142.45 temperature 20.0 1440 > th dose dependent rect. 2 7
440 142.46 temperature 20.0 1440 > th dose dependent rect. 3 4
470 142.51 humidity 90.0 4320 > th dose independent rect. 4 1
473 142.51 humidity 80.0 10 > th dose dependent sin 9 NA
474 142.51 radiation 10.0 1440 < th dose dependent rect. 18 7
477 142.52 temperature 25.0 1440 < th dose independent rect. 17 15
482 142.53 humidity 90.0 4320 > th dose independent rect. 3 3
484 142.53 radiation 40.0 4320 > th dose independent rect. 13 21
501 142.54 atmosphere 1000.0 270 > th dose dependent rect. 18 19
502 142.54 humidity 90.0 14400 > th dose dependent rect. 9 22
503 142.55 humidity 60.0 270 < th dose independent rect. 8 1
529 142.55 humidity 60.0 270 < th dose dependent rect. 8 1
557 142.56 radiation 10.0 1440 < th dose independent rect. 16 1
575 142.56 atmosphere 1000.0 90 > th dose dependent rect. 21 16
583 142.57 wind 1.0 10 < th dose dependent rect. 4 12
589 142.57 humidity 90.0 14400 > th dose dependent rect. 4 23
595 142.58 radiation 20.0 4320 > th dose dependent rect. 8 1
617 142.60 humidity 90.0 14400 > th dose dependent rect. 21 23
618 142.61 temperature 25.0 1440 < th dose independent sin 10 NA
621 142.61 temperature 25.0 1440 > th dose independent rect. 23 12
631 142.61 humidity 90.0 14400 > th dose dependent rect. 1 23
635 142.62 humidity 90.0 14400 > th dose dependent no NA NA
639 142.62 atmosphere 995.0 270 > th dose dependent rect. 4 10
646 142.62 humidity 90.0 14400 > th dose dependent rect. 15 23
671 142.64 humidity 90.0 14400 > th dose independent rect. 10 19
672 142.64 atmosphere 1005.0 90 > th dose independent rect. 20 20
673 142.64 humidity 90.0 14400 > th dose dependent sin 14 NA
674 142.64 radiation 40.0 4320 > th dose dependent rect. 13 2
677 142.64 humidity 90.0 14400 > th dose dependent rect. 11 16
697 142.65 humidity 90.0 14400 > th dose independent rect. 9 22
698 142.65 radiation 40.0 1440 > th dose dependent sin 13 NA
717 142.66 humidity 50.0 43200 < th dose independent rect. 8 2
721 142.66 humidity 90.0 14400 > th dose independent rect. 12 17
750 142.66 atmosphere 1015.0 270 < th dose dependent rect. 23 20
783 142.68 atmosphere 995.0 90 > th dose dependent rect. 6 10
795 142.69 temperature 25.0 1440 < th dose independent rect. 23 1
842 142.71 precipitation 0.1 14400 < th dose independent rect. 5 3
849 142.71 precipitation 0.1 14400 < th dose dependent rect. 5 3
860 142.71 atmosphere 1005.0 90 > th dose dependent rect. 24 23
861 142.71 atmosphere 1010.0 90 < th dose dependent rect. 1 23
862 142.72 temperature 25.0 1440 < th dose independent rect. 17 12
911 142.74 humidity 90.0 14400 > th dose independent sin 14 NA
912 142.74 humidity 90.0 14400 > th dose independent rect. 22 1
958 142.76 temperature 25.0 1440 > th dose independent sin 10 NA
960 142.76 radiation 40.0 4320 < th dose independent rect. 4 6
973 142.76 humidity 90.0 14400 > th dose independent rect. 21 22
984 142.77 humidity 90.0 14400 < th dose independent rect. 22 1
994 142.77 radiation 40.0 4320 < th dose independent rect. 18 16
998 142.77 atmosphere 1010.0 90 < th dose dependent no NA NA
999 142.77 humidity 90.0 14400 > th dose dependent rect. 21 5