Os02g0774500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase).
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Os02g0774500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.4 | 0.682 | 5.32 | -1.31 | 0.562 | -3.32 | -0.647 | -2.63 | -0.518 | 21.2 | 29.6 | 8 | -- | -- |
| 218.86 | 0.689 | 5.37 | -1.73 | 0.572 | -3.37 | -1.12 | -- | -0.635 | 21.6 | 30.1 | 9 | -- | -- |
| 211.49 | 0.677 | 5.31 | -1.21 | 0.564 | -3.27 | -- | -2.96 | -0.495 | 20.9 | 29.5 | 4 | -- | -- |
| 223.75 | 0.697 | 5.36 | -1.7 | 0.575 | -3.26 | -- | -- | -0.605 | 20.7 | 29.97 | 3 | -- | -- |
| 225.13 | 0.699 | 5.29 | -1.23 | -- | -3.26 | -- | -3 | -0.494 | -- | 29.5 | 89 | -- | -- |
| 357.38 | 0.886 | 5.22 | -0.96 | 1.14 | -- | 1.99 | -- | 0.0117 | 15.8 | -- | -- | -- | -- |
| 368.57 | 0.899 | 5.22 | -0.931 | 1.17 | -- | -- | -- | 0.0235 | 16.1 | -- | -- | -- | -- |
| 236.33 | 0.716 | 5.35 | -1.73 | -- | -3.29 | -- | -- | -0.605 | -- | 30.24 | 90 | -- | -- |
| 292.85 | 0.797 | 5.3 | -- | 0.611 | -2.57 | -- | -- | -0.305 | 19 | 30.1 | 4 | -- | -- |
| 442.76 | 0.983 | 5.21 | -0.979 | -- | -- | -- | -- | -0.00767 | -- | -- | -- | -- | -- |
| 391.43 | 0.925 | 5.2 | -- | 1.19 | -- | -- | -- | 0.127 | 16.1 | -- | -- | -- | -- |
| 309.57 | 0.819 | 5.28 | -- | -- | -2.81 | -- | -- | -0.307 | -- | 30.93 | 55 | -- | -- |
| 468.02 | 1.01 | 5.19 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 2 | 210.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 211.04 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 5 | 211.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 6 | 211.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 8 | 211.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 13 | 212.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 14 | 212.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 21 | 217.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 22 | 217.65 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 26 | 218.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 31 | 219.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 33 | 221.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 48 | 224.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 71 | 227.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 72 | 227.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 99 | 231.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 105 | 231.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 121 | 233.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 154 | 236.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 210 | 239.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 240 | 241.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 242 | 241.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 423 | 247.22 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 467 | 248.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 472 | 248.33 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 484 | 248.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 651 | 251.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 681 | 251.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 709 | 251.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 718 | 251.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 826 | 252.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |