BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0774500 Os02g0774500|AK110707
         (286 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12040.1  | chr3:3835349-3836781 REVERSE LENGTH=255            343   6e-95

>AT3G12040.1 | chr3:3835349-3836781 REVERSE LENGTH=255
          Length = 254

 Score =  343 bits (880), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 192/228 (84%), Gaps = 2/228 (0%)

Query: 59  RTRRVAAGETIAAGKPPHPACTAVSLQSPFGPALPRDFFEVDALDLAPRLLGKLLRRDEV 118
           RTR+    +T AA   P    T  + +S     +P +FF++DALDLAPRLLGK +RRD V
Sbjct: 27  RTRKTNCSKTRAARVRPDYPLTRTTSESEM-KLMPPEFFQIDALDLAPRLLGKFMRRDNV 85

Query: 119 VLRITEVEAYRPNDSACHGRFGITARTAPVFGSGGHAYVYLCYGLHMMLNVVADKEGVGA 178
           VLRITEVEAYRPNDSACHGRFG+T RTAPVFG GGHAYVYLCYGLHMMLN+VADKEGVGA
Sbjct: 86  VLRITEVEAYRPNDSACHGRFGVTPRTAPVFGPGGHAYVYLCYGLHMMLNIVADKEGVGA 145

Query: 179 AVLIRSCAPVSGLATIQQRRGQQTDKPLLLTGPGKVGQALGLSTDWSNHPLYTPGGLEVL 238
           AVLIRSC+PVSG+ TIQ+RRG +TDKP+LL GPGKVGQALGLST+WS+HPLY+PGGLE+L
Sbjct: 146 AVLIRSCSPVSGMETIQERRGLKTDKPVLLNGPGKVGQALGLSTEWSHHPLYSPGGLELL 205

Query: 239 DGPEP-ENILVGPRVGIEYASPEHVAAPWRFAVAGTPWISAPKNTLRP 285
           DG E  E ++VGPRVGI+YA PEHV A WRFAVA TPWISAPKNTL+P
Sbjct: 206 DGGEDVEKVMVGPRVGIDYALPEHVNALWRFAVADTPWISAPKNTLKP 253



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,802,439
Number of extensions: 243186
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)