Os02g0773300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyridoxal phosphate-dependent deaminase family protein.
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Os02g0773300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyridoxal phosphate-dependent deaminase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.29 | 0.633 | 9.33 | -2.21 | 1.14 | 1.9 | -0.938 | -3.15 | -0.946 | 8.41 | 10.18 | 646 | -- | -- |
| 187.5 | 0.638 | 9.27 | -1.68 | 1.16 | 1.89 | -0.28 | -- | -0.806 | 8.19 | 8.833 | 588 | -- | -- |
| 183.49 | 0.631 | 9.31 | -2.1 | 1.16 | 1.95 | -- | -2.39 | -0.914 | 8.25 | 8.425 | 588 | -- | -- |
| 187.73 | 0.638 | 9.26 | -1.69 | 1.17 | 1.9 | -- | -- | -0.804 | 8.24 | 8.895 | 592 | -- | -- |
| 214.58 | 0.682 | 9.38 | -2.41 | -- | 1.45 | -- | -3.2 | -0.961 | -- | 10.51 | 1454 | -- | -- |
| 229.99 | 0.711 | 9.21 | -1.22 | 0.698 | -- | -0.471 | -- | -0.517 | 8.71 | -- | -- | -- | -- |
| 230.7 | 0.711 | 9.21 | -1.24 | 0.698 | -- | -- | -- | -0.516 | 8.82 | -- | -- | -- | -- |
| 222.68 | 0.695 | 9.32 | -1.95 | -- | 1.39 | -- | -- | -0.879 | -- | 7.11 | 7247 | -- | -- |
| 254.2 | 0.743 | 9.2 | -- | 0.963 | 1.14 | -- | -- | -0.519 | 8.27 | 12.65 | 496 | -- | -- |
| 258.39 | 0.751 | 9.23 | -1.24 | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
| 271.01 | 0.77 | 9.18 | -- | 0.695 | -- | -- | -- | -0.379 | 8.95 | -- | -- | -- | -- |
| 266.46 | 0.76 | 9.21 | -- | -- | 0.716 | -- | -- | -0.46 | -- | 34.2 | 7380 | -- | -- |
| 298.71 | 0.807 | 9.2 | -- | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.21 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 173.58 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 4 | 173.73 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 7 | 173.93 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 43 | 176.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 47 | 176.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 57 | 177.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 80 | 178.10 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 87 | 178.32 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 89 | 178.37 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 105 | 178.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 108 | 178.58 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 139 | 178.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 143 | 178.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 183 | 179.42 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 184 | 179.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 187 | 179.45 | humidity | 70 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 200 | 179.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 255 | 180.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 274 | 180.18 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 279 | 180.22 | humidity | 80 | 14400 | > th | dose independent | sin | 21 | NA |
| 285 | 180.24 | humidity | 80 | 14400 | < th | dose independent | sin | 21 | NA |
| 295 | 180.28 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 318 | 180.42 | humidity | 70 | 14400 | > th | dose dependent | sin | 19 | NA |
| 478 | 181.36 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 531 | 181.57 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 536 | 181.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 553 | 181.65 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 562 | 181.69 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 614 | 181.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 642 | 182.04 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 669 | 182.13 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 686 | 182.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 689 | 182.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 935 | 182.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 939 | 182.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 962 | 182.99 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |