BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0773300 Os02g0773300|AK071811
         (385 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48420.1  | chr1:17896767-17898803 REVERSE LENGTH=402          544   e-155

>AT1G48420.1 | chr1:17896767-17898803 REVERSE LENGTH=402
          Length = 401

 Score =  544 bits (1401), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/381 (67%), Positives = 310/381 (81%), Gaps = 1/381 (0%)

Query: 6   AASAAGKIGSFLSKRPYAPPSWASHLSPAPSQTFSLGHFPTPIHKWNLPNLPNGTEVWIK 65
           +A++   +  FL+K+PY+PPSWASHL P PS TFSL H PTPIH+WNLP LPNGTE+WIK
Sbjct: 21  SATSVPSMADFLTKKPYSPPSWASHLRPLPSHTFSLAHLPTPIHRWNLPGLPNGTELWIK 80

Query: 66  RDDISGMQLSGNKVRKLEFLMADAVAQGADCVITVGGIQSNHCRATAVAAKYINLDCYLI 125
           RDD +GM+LSGNKVRKLEFLMA+AV Q AD VIT+GGIQSNHCRATA A+ Y+NL+ +LI
Sbjct: 81  RDDFTGMELSGNKVRKLEFLMAEAVDQHADTVITIGGIQSNHCRATATASNYLNLNSHLI 140

Query: 126 LRTSKLLVDKDPGLVGNLLVERLVGAHIDLVSKEEYGKIGSVALADXXXXXXXEEGRKPY 185
           LRTSKLL D+DPGLVGNLLVERLVGA++ L+SKEEY  IGS AL +       +EG+KPY
Sbjct: 141 LRTSKLLADEDPGLVGNLLVERLVGANVHLISKEEYSSIGSEALTNALKEKLEKEGKKPY 200

Query: 186 VIPVGGSNSLGTWGYIEAIREIEHQIQIS-GDVQFDDIVVACGSGGTIXXXXXXXXXXXX 244
           VIPVGGSNSLGTWGYIEA REIE Q+     D++FDDIVVACGSGGTI            
Sbjct: 201 VIPVGGSNSLGTWGYIEAAREIEEQLNYRPDDLKFDDIVVACGSGGTIAGISLGSWLGAL 260

Query: 245 XXXVHAFSVCDDPGYFHSYVQDLIDGLHSDLRSHDLVNIENAKGLGYAMNTAEELKFVKD 304
              VHAFSVCDDP YF+ +VQ L+DGLH+ + S D+VNI NAKG GYAMNT+EEL+FVK 
Sbjct: 261 KAKVHAFSVCDDPDYFYDFVQGLLDGLHAGVNSRDIVNIHNAKGKGYAMNTSEELEFVKK 320

Query: 305 IATATGIVLDPVYSGKAAYGMLKDMGANPAKWEGRKILFVHTGGLLGLYDKVDELSSLSG 364
           +A++TG++LDPVYSGKAAYG++ ++  +P  WEGRKILF+HTGGLLGLYDKVD+++SL G
Sbjct: 321 VASSTGVILDPVYSGKAAYGLINEITKDPKCWEGRKILFIHTGGLLGLYDKVDQMASLMG 380

Query: 365 SWRRMDLEESVPRKDGTGKMF 385
           +W RMD+ ESVPRKDG GKMF
Sbjct: 381 NWSRMDVSESVPRKDGVGKMF 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,535,273
Number of extensions: 362752
Number of successful extensions: 786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 285
Effective length of database: 8,364,969
Effective search space: 2384016165
Effective search space used: 2384016165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)