Os02g0764100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AP2 domain containing protein RAP2.8 (Fragment).
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Os02g0764100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AP2 domain containing protein RAP2.8 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 280.47 | 0.787 | 10.7 | -0.992 | 1.46 | 1.47 | 1.53 | -1.66 | -0.0507 | 0.315 | 13.9 | 1446 | -- | -- |
| 285.54 | 0.787 | 10.7 | -1.15 | 1.44 | 1.52 | 1.71 | -- | -0.0626 | 0.361 | 13.08 | 1463 | -- | -- |
| 288.39 | 0.791 | 10.8 | -0.914 | 1.69 | 1.39 | -- | -2.43 | -0.087 | 0.179 | 24.89 | 1357 | -- | -- |
| 295.23 | 0.8 | 10.7 | -1.25 | 1.4 | 1.46 | -- | -- | -0.111 | 0.404 | 13.36 | 1474 | -- | -- |
| 326.08 | 0.841 | 10.7 | -0.955 | -- | 3.14 | -- | -1.39 | -0.0302 | -- | 4.734 | 1624 | -- | -- |
| 349.43 | 0.876 | 10.8 | -1.37 | 1.46 | -- | 1.21 | -- | -0.468 | 0.246 | -- | -- | -- | -- |
| 355.71 | 0.883 | 10.8 | -1.41 | 1.46 | -- | -- | -- | -0.474 | 0.282 | -- | -- | -- | -- |
| 320.14 | 0.833 | 10.7 | -1.11 | -- | 3.04 | -- | -- | -0.0644 | -- | 5.018 | 1629 | -- | -- |
| 335.38 | 0.853 | 10.7 | -- | 1.46 | 1.49 | -- | -- | 0.0352 | 0.326 | 16.85 | 1455 | -- | -- |
| 489.77 | 1.03 | 10.8 | -1.37 | -- | -- | -- | -- | -0.452 | -- | -- | -- | -- | -- |
| 408.44 | 0.945 | 10.8 | -- | 1.44 | -- | -- | -- | -0.317 | 0.23 | -- | -- | -- | -- |
| 349.32 | 0.87 | 10.7 | -- | -- | 3.29 | -- | -- | 0.0468 | -- | 3.824 | 1624 | -- | -- |
| 538.99 | 1.08 | 10.8 | -- | -- | -- | -- | -- | -0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 276.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 4 | 276.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 9 | 277.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 12 | 277.10 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 100 | 280.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 108 | 280.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 117 | 280.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 135 | 280.86 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 140 | 281.09 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 141 | 281.10 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 152 | 281.13 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 175 | 281.21 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 190 | 281.27 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 212 | 281.37 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 330 | 281.99 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 338 | 282.05 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 339 | 282.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 418 | 282.06 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 473 | 282.23 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 529 | 282.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 542 | 282.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 597 | 283.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 655 | 283.19 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 5 |
| 791 | 284.20 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 811 | 284.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 819 | 284.32 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 821 | 284.33 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 13 |
| 844 | 284.48 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 908 | 284.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 917 | 284.72 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 927 | 284.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 19 |