BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0764100 Os02g0764100|AK066197
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25560.1 | chr1:8981891-8982976 REVERSE LENGTH=362 67 2e-12
AT1G68840.1 | chr1:25880442-25881500 FORWARD LENGTH=353 67 2e-12
AT1G13260.1 | chr1:4542386-4543420 FORWARD LENGTH=345 65 9e-12
AT3G11580.1 | chr3:3649165-3651271 REVERSE LENGTH=268 63 4e-11
AT5G06250.2 | chr5:1892714-1894058 REVERSE LENGTH=283 62 5e-11
AT3G61970.1 | chr3:22951829-22952728 FORWARD LENGTH=300 62 6e-11
AT2G46870.1 | chr2:19261313-19262245 FORWARD LENGTH=311 59 5e-10
AT3G25730.1 | chr3:9396505-9397506 FORWARD LENGTH=334 59 5e-10
AT2G36080.1 | chr2:15148612-15151411 REVERSE LENGTH=245 59 7e-10
AT1G01030.1 | chr1:11864-12940 REVERSE LENGTH=359 57 1e-09
AT4G01500.1 | chr4:639791-640792 FORWARD LENGTH=334 54 2e-08
AT1G51120.1 | chr1:18938091-18939149 FORWARD LENGTH=353 48 8e-07
AT1G50680.1 | chr1:18777601-18778614 REVERSE LENGTH=338 48 8e-07
>AT1G25560.1 | chr1:8981891-8982976 REVERSE LENGTH=362
Length = 361
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 12 AREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
ARE LFEK VTPSDVGKLNRL++PKQHAEKHFPL
Sbjct: 190 AREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPL 223
>AT1G68840.1 | chr1:25880442-25881500 FORWARD LENGTH=353
Length = 352
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 12 AREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
RE LFEKAVTPSDVGKLNRL++PKQHAEKHFPL
Sbjct: 183 TREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPL 216
>AT1G13260.1 | chr1:4542386-4543420 FORWARD LENGTH=345
Length = 344
Score = 64.7 bits (156), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/32 (87%), Positives = 30/32 (93%)
Query: 14 EPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
E LFEKAVTPSDVGKLNRL++PK HAEKHFPL
Sbjct: 185 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPL 216
>AT3G11580.1 | chr3:3649165-3651271 REVERSE LENGTH=268
Length = 267
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 32/33 (96%)
Query: 13 REPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
RE LFEK++TPSDVGKLNRL++PKQHAEK+FPL
Sbjct: 25 RESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPL 57
>AT5G06250.2 | chr5:1892714-1894058 REVERSE LENGTH=283
Length = 282
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 32/33 (96%)
Query: 13 REPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
+E LFEK++TPSDVGKLNRL++PKQHAEK+FPL
Sbjct: 42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPL 74
>AT3G61970.1 | chr3:22951829-22952728 FORWARD LENGTH=300
Length = 299
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 6 QPTPSWAREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
+ + S RE +F+K VTPSDVGKLNRL++PKQHAE++FPL
Sbjct: 12 EASSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPL 51
>AT2G46870.1 | chr2:19261313-19262245 FORWARD LENGTH=311
Length = 310
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 13 REPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
RE +F+K VTPSDVGKLNRL++PKQHAE+ FPL
Sbjct: 31 REHMFDKVVTPSDVGKLNRLVIPKQHAERFFPL 63
>AT3G25730.1 | chr3:9396505-9397506 FORWARD LENGTH=334
Length = 333
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 14 EPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
E LFEK VTPSDVGKLNRL++PK AEKHFPL
Sbjct: 180 ELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPL 211
>AT2G36080.1 | chr2:15148612-15151411 REVERSE LENGTH=245
Length = 244
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 31/33 (93%)
Query: 13 REPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
+E LFEK +TPSDVGKLNRL++PKQHAE++FPL
Sbjct: 34 KEALFEKPLTPSDVGKLNRLVIPKQHAERYFPL 66
>AT1G01030.1 | chr1:11864-12940 REVERSE LENGTH=359
Length = 358
Score = 57.4 bits (137), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 9 PSWAREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
P +E +F+K VTPSDVGKLNRL++PKQHAE++FPL
Sbjct: 48 PPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPL 84
>AT4G01500.1 | chr4:639791-640792 FORWARD LENGTH=334
Length = 333
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 13 REPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
RE +F+K +TPSDVGKLNRL++PKQHAE FPL
Sbjct: 32 REHMFDKVLTPSDVGKLNRLVIPKQHAENFFPL 64
>AT1G51120.1 | chr1:18938091-18939149 FORWARD LENGTH=353
Length = 352
Score = 48.1 bits (113), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 16 LFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
LF+K +TPSDVGKLNRL++PK++A K+ P
Sbjct: 177 LFQKELTPSDVGKLNRLVIPKKYAVKYMPF 206
>AT1G50680.1 | chr1:18777601-18778614 REVERSE LENGTH=338
Length = 337
Score = 48.1 bits (113), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 16 LFEKAVTPSDVGKLNRLLVPKQHAEKHFPL 45
LF+K +TPSDVGKLNRL++PK++A K+ P
Sbjct: 156 LFQKELTPSDVGKLNRLVIPKKYAVKYMPF 185
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,031,010
Number of extensions: 26164
Number of successful extensions: 63
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 13
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)