FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0756600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phi-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0361) R2 : 0.0197
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.23 (0.0759) R2dN8 : 0.0254 R2N8 : 0.0197
σ : 0.679
deviance : 211.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.57 0.641 3.02 0.0653 0.199 -0.145 2.01 1.99 0.264 15.2 10 10 -- --
195.77 0.657 3.04 -0.00837 0.182 -0.273 1.69 -- 0.242 19.5 9.853 2 -- --
196.92 0.659 3.03 0.0321 0.199 -0.251 -- 1.03 0.262 18.3 10 10 -- --
203.49 0.669 3.04 -0.0476 0.187 -0.245 -- -- 0.244 18.1 9.853 2 -- --
198.39 0.66 3.03 0.026 -- -0.239 -- 1.02 0.258 -- 9.773 10 -- --
202.62 0.667 3.04 -0.0411 0.103 -- 1.78 -- 0.219 18.9 -- -- -- --
205.76 0.672 3.04 -0.0626 0.31 -- -- -- 0.229 14.5 -- -- -- --
205.29 0.67 3.03 -0.0532 -- -0.241 -- -- 0.239 -- 9.853 2 -- --
203.55 0.668 3.04 -- 0.187 -0.247 -- -- 0.249 18.2 9.853 2 -- --
211.44 0.679 3.04 -0.0758 -- -- -- -- 0.221 -- -- -- -- --
205.86 0.671 3.03 -- 0.312 -- -- -- 0.236 14.5 -- -- -- --
205.37 0.67 3.03 -- -- -0.243 -- -- 0.245 -- 9.853 2 -- --
211.59 0.679 3.04 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.32 temperature 25.0 270 < th dose dependent rect. 5 3
2 182.83 temperature 25.0 270 < th dose dependent rect. 4 5
15 186.30 radiation 10.0 10 < th dose independent sin 6 NA
21 186.56 temperature 30.0 720 < th dose independent rect. 15 15
25 186.80 radiation 1.0 270 < th dose dependent rect. 5 4
29 186.97 temperature 20.0 270 < th dose independent rect. 5 3
30 187.04 temperature 25.0 10 < th dose independent rect. 6 4
39 187.28 radiation 10.0 90 < th dose independent sin 7 NA
42 187.31 temperature 30.0 1440 < th dose independent rect. 18 14
52 187.46 temperature 25.0 90 < th dose independent rect. 7 4
63 187.65 radiation 10.0 10 < th dose independent rect. 18 21
76 188.09 radiation 10.0 10 < th dose independent rect. 24 15
78 188.14 radiation 10.0 10 < th dose independent rect. 18 23
79 188.15 radiation 10.0 10 < th dose independent rect. 16 23
81 188.18 temperature 30.0 720 < th dose independent rect. 2 18
86 188.28 temperature 30.0 720 > th dose independent rect. 12 1
88 188.29 temperature 25.0 270 < th dose independent rect. 7 1
90 188.36 temperature 30.0 720 < th dose independent rect. 8 22
95 188.62 radiation 10.0 90 < th dose independent rect. 17 21
99 188.75 radiation 10.0 90 < th dose independent rect. 23 15
123 189.18 temperature 30.0 720 < th dose independent sin 14 NA
125 189.19 temperature 25.0 30 > th dose dependent rect. 23 1
131 189.32 radiation 10.0 10 < th dose independent rect. 21 23
135 189.43 radiation 10.0 90 < th dose independent rect. 21 17
142 189.56 radiation 10.0 10 < th dose independent rect. 9 23
143 189.56 radiation 10.0 10 < th dose independent rect. 11 23
144 189.57 radiation 10.0 10 < th dose independent no NA NA
152 189.64 radiation 10.0 10 < th dose independent rect. 24 17
156 189.66 humidity 70.0 90 > th dose dependent rect. 7 4
160 189.69 radiation 10.0 10 < th dose independent rect. 13 23
167 189.79 humidity 50.0 30 > th dose dependent rect. 7 6
178 189.94 radiation 10.0 10 < th dose dependent sin 5 NA
181 189.98 radiation 10.0 10 < th dose independent rect. 21 18
190 190.08 humidity 50.0 720 < th dose independent rect. 13 1
191 190.08 radiation 10.0 10 < th dose independent rect. 21 20
215 190.27 temperature 15.0 720 > th dose dependent rect. 24 1
223 190.37 humidity 80.0 270 > th dose dependent rect. 7 1
226 190.41 radiation 10.0 10 < th dose independent rect. 24 10
234 190.47 humidity 90.0 270 > th dose dependent rect. 6 3
250 190.58 radiation 10.0 10 < th dose dependent rect. 18 21
252 190.59 radiation 10.0 10 < th dose independent rect. 2 13
253 190.59 radiation 10.0 10 < th dose independent rect. 5 23
258 190.60 radiation 10.0 90 < th dose independent rect. 8 23
266 190.64 radiation 10.0 90 < th dose independent rect. 21 23
273 190.72 temperature 30.0 720 < th dose independent rect. 11 17
283 190.76 radiation 10.0 10 < th dose independent rect. 23 23
296 190.84 humidity 80.0 270 > th dose independent rect. 7 1
306 190.93 temperature 30.0 720 < th dose independent rect. 13 16
309 190.94 radiation 10.0 10 < th dose independent rect. 3 23
323 191.04 temperature 25.0 30 > th dose independent rect. 23 1
337 191.12 humidity 70.0 270 > th dose dependent rect. 5 5
349 191.20 radiation 10.0 90 < th dose independent no NA NA
360 191.23 radiation 10.0 10 < th dose independent rect. 1 23
370 191.29 radiation 1.0 720 < th dose dependent rect. 21 10
383 191.33 radiation 40.0 10 < th dose dependent rect. 11 20
392 191.38 radiation 10.0 10 < th dose dependent rect. 16 23
394 191.40 wind 5.0 30 > th dose independent rect. 12 1
442 191.63 temperature 30.0 720 < th dose independent rect. 8 6
453 191.66 temperature 30.0 720 < th dose independent rect. 5 15
454 191.67 radiation 1.0 270 < th dose independent rect. 5 5
462 191.69 radiation 10.0 10 < th dose dependent rect. 24 15
463 191.69 radiation 20.0 10 < th dose dependent rect. 11 20
475 191.72 temperature 30.0 720 < th dose independent rect. 5 23
478 191.73 temperature 30.0 10 < th dose independent rect. 11 20
480 191.75 humidity 80.0 270 > th dose independent rect. 5 4
522 191.86 humidity 60.0 10 > th dose independent rect. 7 4
524 191.86 wind 3.0 30 > th dose dependent rect. 12 1
531 191.87 humidity 50.0 30 > th dose dependent rect. 13 18
535 191.89 temperature 30.0 1440 < th dose independent rect. 18 3
537 191.89 humidity 80.0 10 > th dose independent rect. 24 7
545 191.91 radiation 10.0 10 < th dose dependent rect. 18 23
547 191.93 wind 1.0 270 > th dose independent rect. 7 1
564 191.98 radiation 1.0 270 < th dose independent rect. 6 3
569 191.99 temperature 30.0 720 < th dose independent sin 1 NA
592 192.04 humidity 60.0 30 > th dose independent rect. 7 6
600 192.06 wind 5.0 30 < th dose independent rect. 7 4
616 192.13 radiation 10.0 10 < th dose independent rect. 18 14
618 192.13 radiation 10.0 90 < th dose independent rect. 5 23
619 192.13 temperature 25.0 270 < th dose dependent sin 6 NA
632 192.16 wind 9.0 30 < th dose dependent rect. 11 20
636 192.18 wind 1.0 270 > th dose independent rect. 5 4
668 192.26 radiation 10.0 90 < th dose independent rect. 23 23
673 192.28 atmosphere 1005.0 30 > th dose independent rect. 12 1
675 192.28 wind 1.0 10 > th dose independent rect. 7 11
689 192.29 humidity 90.0 270 > th dose dependent rect. 5 10
705 192.33 wind 1.0 10 > th dose independent rect. 7 4
721 192.36 humidity 50.0 10 > th dose independent rect. 7 17
743 192.42 atmosphere 1000.0 30 > th dose independent rect. 11 20
758 192.45 wind 9.0 10 < th dose independent rect. 11 20
762 192.46 wind 3.0 30 < th dose independent rect. 15 16
765 192.46 humidity 50.0 30 > th dose dependent rect. 7 8
770 192.47 humidity 50.0 270 > th dose independent rect. 9 20
776 192.50 radiation 40.0 30 < th dose independent rect. 7 4
777 192.50 temperature 15.0 270 > th dose independent rect. 9 10
791 192.52 radiation 10.0 270 < th dose independent rect. 21 12
806 192.55 atmosphere 1005.0 30 > th dose dependent rect. 12 1
816 192.57 wind 5.0 270 < th dose independent rect. 7 1
820 192.58 atmosphere 1000.0 30 > th dose independent rect. 13 18
836 192.61 atmosphere 1000.0 10 > th dose independent rect. 7 17
844 192.62 wind 3.0 30 < th dose independent rect. 21 10
848 192.63 atmosphere 1015.0 720 < th dose independent rect. 2 18
849 192.63 humidity 60.0 30 > th dose dependent rect. 12 1
850 192.63 temperature 30.0 720 < th dose dependent rect. 22 4
857 192.64 wind 3.0 30 < th dose independent rect. 11 20
884 192.69 radiation 10.0 10 < th dose dependent rect. 21 23
899 192.71 atmosphere 1015.0 30 < th dose dependent rect. 7 4
903 192.73 temperature 30.0 720 < th dose independent rect. 8 9
918 192.75 atmosphere 1000.0 270 > th dose independent rect. 8 22
928 192.78 humidity 50.0 30 > th dose independent rect. 13 18
929 192.78 precipitation 0.1 270 < th dose independent rect. 8 23
932 192.78 precipitation 0.1 270 < th dose dependent rect. 8 23
939 192.79 radiation 10.0 10 < th dose dependent rect. 9 23
944 192.80 radiation 10.0 10 < th dose dependent no NA NA
959 192.82 radiation 10.0 10 < th dose dependent rect. 11 23
965 192.83 temperature 10.0 30 > th dose dependent rect. 24 7
967 192.83 temperature 30.0 30 < th dose dependent rect. 7 11
974 192.84 atmosphere 1000.0 270 > th dose independent rect. 9 20
993 192.86 radiation 10.0 10 < th dose dependent rect. 13 23
995 192.87 temperature 10.0 270 > th dose independent rect. 7 1
998 192.87 humidity 50.0 270 > th dose independent rect. 7 1
1000 192.87 atmosphere 995.0 270 > th dose independent rect. 7 1