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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0756200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phi-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0432) R2 : 0.26
β1 : -0.738 (0.159) R2dD : 0.0543 R2D : 0.0676
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.48 (0.14) R2dE : 0.184 R2E : 0.206
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.106 (0.0931) R2dN8 : 0.00294 R2N8 : 0.00466
σ : 0.806
deviance : 299.29
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.1
memory length : 88
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.67
open length of G : 5.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.85 0.775 3.3 -0.728 0.404 1.05 -0.63 -1.9 -0.128 8.82 25.14 72 5.88 5.92
281.69 0.782 3.32 -0.733 0.376 1.08 -1.57 -- -0.107 8.59 25.3 85 5.77 6.05
272.54 0.769 3.29 -0.665 0.418 1.1 -- -2.14 -0.1 8.73 25.2 75 5.82 5.91
291.66 0.795 3.32 -0.908 0.43 1.25 -- -- -0.148 8.77 25.2 77 6.03 5.5
276.34 0.774 3.31 -0.599 -- 1.27 -- -2.27 -0.0922 -- 25.43 80 5.72 6
309.69 0.825 3.34 -1.06 0.822 -- -2.23 -- -0.295 9.28 -- -- -- --
327.51 0.847 3.34 -1.14 0.829 -- -- -- -0.297 9.32 -- -- -- --
299.29 0.806 3.31 -0.738 -- 1.48 -- -- -0.106 -- 25.1 88 5.67 5.85
315.76 0.828 3.3 -- 0.383 1.35 -- -- -0.0481 8.75 25.2 78 5.98 5.57
367.63 0.896 3.37 -1.14 -- -- -- -- -0.294 -- -- -- -- --
361.72 0.89 3.31 -- 0.83 -- -- -- -0.17 9.42 -- -- -- --
320.3 0.834 3.31 -- -- 1.52 -- -- -0.0371 -- 25.4 82 5.75 5.78
402.12 0.936 3.34 -- -- -- -- -- -0.167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 275.68 temperature 25 90 < th dose independent rect. 6 6
3 276.93 temperature 25 270 < th dose independent rect. 4 7
10 280.07 temperature 25 10 < th dose independent rect. 7 5
12 280.56 temperature 25 10 < th dose independent rect. 7 11
26 281.61 temperature 25 90 < th dose independent rect. 6 12
39 282.80 temperature 20 720 > th dose dependent rect. 3 4
40 282.80 temperature 20 720 > th dose dependent rect. 2 6
50 283.32 temperature 20 720 > th dose independent rect. 3 3
51 283.38 temperature 25 10 > th dose independent rect. 8 10
52 283.41 temperature 20 720 > th dose dependent rect. 5 1
54 283.50 radiation 30 1440 < th dose independent rect. 16 2
59 283.85 temperature 25 270 < th dose independent rect. 7 1
63 284.06 radiation 30 1440 < th dose independent rect. 16 15
67 284.20 temperature 20 720 < th dose independent rect. 5 1
71 284.26 radiation 30 1440 < th dose independent rect. 16 13
76 284.40 temperature 25 90 > th dose independent rect. 5 12
78 284.40 temperature 25 270 < th dose dependent rect. 5 4
88 284.80 temperature 25 10 < th dose independent rect. 7 9
99 285.13 radiation 30 1440 < th dose independent rect. 16 11
104 285.23 temperature 25 270 > th dose independent rect. 3 11
114 285.38 temperature 25 270 < th dose dependent rect. 7 1
115 285.39 radiation 30 1440 < th dose independent rect. 16 9
135 285.80 temperature 20 270 > th dose dependent rect. 3 11
145 285.97 temperature 25 10 > th dose dependent rect. 12 23
157 286.21 temperature 25 90 > th dose independent sin 1 NA
173 286.55 radiation 30 1440 < th dose independent rect. 16 7
218 287.41 temperature 25 90 < th dose independent sin 1 NA
227 287.55 temperature 20 720 < th dose independent rect. 1 6
237 287.70 temperature 20 720 > th dose dependent sin 7 NA
244 287.81 temperature 20 720 < th dose independent rect. 23 8
251 287.91 temperature 20 270 > th dose dependent sin 4 NA
265 288.07 radiation 1 14400 > th dose independent rect. 11 1
283 288.39 radiation 1 14400 < th dose independent rect. 10 2
284 288.39 radiation 1 14400 < th dose dependent rect. 10 2
286 288.41 radiation 10 90 > th dose dependent rect. 6 1
301 288.44 temperature 10 720 > th dose dependent rect. 1 5
315 288.61 temperature 25 10 > th dose dependent rect. 6 12
353 288.97 temperature 25 10 < th dose independent sin 23 NA
369 289.19 temperature 25 10 > th dose dependent rect. 23 19
374 289.23 temperature 25 10 > th dose dependent rect. 21 21
380 289.26 temperature 25 10 > th dose dependent rect. 19 23
390 289.35 temperature 30 90 < th dose dependent rect. 6 13
403 289.41 temperature 30 10 < th dose dependent rect. 6 6
420 289.55 radiation 20 270 > th dose independent rect. 6 1
483 289.97 temperature 30 270 < th dose dependent rect. 4 13
561 290.55 temperature 25 10 < th dose independent rect. 7 3
567 290.60 temperature 30 720 < th dose dependent rect. 23 9
592 290.71 temperature 25 90 < th dose independent rect. 9 2
596 290.73 temperature 10 720 > th dose dependent rect. 23 7
664 291.12 temperature 10 270 > th dose dependent rect. 1 13
665 291.13 radiation 10 30 < th dose independent sin 8 NA
770 291.63 radiation 1 14400 < th dose dependent rect. 8 7
794 291.74 radiation 40 14400 < th dose independent rect. 22 10
829 291.89 radiation 40 14400 < th dose independent rect. 24 8
837 291.93 radiation 40 14400 < th dose independent rect. 2 6
839 291.94 radiation 40 4320 < th dose independent rect. 15 17
847 291.98 wind 7 4320 < th dose independent rect. 1 1
849 291.99 radiation 40 14400 < th dose independent rect. 6 2
855 292.01 temperature 25 10 > th dose dependent sin 1 NA
873 292.09 radiation 40 14400 < th dose independent rect. 4 4
877 292.10 radiation 1 14400 < th dose independent rect. 8 7
891 292.16 atmosphere 1015 43200 < th dose independent rect. 16 1
893 292.17 radiation 1 14400 > th dose independent rect. 8 7
900 292.18 temperature 25 10 > th dose dependent rect. 6 18
970 292.40 wind 9 43200 < th dose independent rect. 1 1
985 292.44 atmosphere 1015 43200 > th dose independent rect. 15 1