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Os02g0754700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histidyl-tRNA synthetase (EC 6.1.1.21).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.44 (0.0271) R2 : 0.461
β1 : -1.17 (0.0993) R2dD : 0.171 R2D : 0.0265
β2 : 0.768 (0.0706) R2dC : 0.141 R2C : 0.0897
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.759 (0.0579) R2dN8 : 0.273 R2N8 : 0.146
σ : 0.51
deviance : 118.54
__
_____
C
peak time of C : 18.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.09 0.484 9.44 -1.05 0.735 0.33 0.968 1.31 -0.785 18 43.31 1200 -- --
109.33 0.487 9.46 -1.18 0.673 0.416 1.02 -- -0.808 18 43.31 1162 -- --
108.01 0.484 9.44 -1.03 0.713 0.332 -- 1.46 -0.782 18.2 43.31 1160 -- --
111.84 0.493 9.46 -1.21 0.679 0.399 -- -- -0.843 18.1 43.3 1155 -- --
109.35 0.487 9.44 -1.17 -- 0.847 -- 1.7 -0.849 -- 39.38 559 -- --
116.12 0.505 9.44 -1.16 0.764 -- 0.99 -- -0.762 18.5 -- -- -- --
118.54 0.51 9.44 -1.17 0.768 -- -- -- -0.759 18.6 -- -- -- --
112.99 0.495 9.44 -1.27 -- 0.969 -- -- -0.888 -- 40.69 559 -- --
133.13 0.537 9.32 -- 0.77 0.663 -- -- -0.656 19.1 49.67 24414 -- --
149.25 0.571 9.43 -1.19 -- -- -- -- -0.774 -- -- -- -- --
154.67 0.582 9.41 -- 0.782 -- -- -- -0.628 18.5 -- -- -- --
153.78 0.578 9.4 -- -- 0.916 -- -- -0.719 -- 39.99 559 -- --
186.55 0.638 9.4 -- -- -- -- -- -0.642 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.46 temperature 30.0 270 < th dose dependent rect. 23 6
4 93.96 temperature 25.0 90 < th dose independent rect. 1 8
5 94.06 temperature 10.0 270 > th dose dependent rect. 19 14
6 94.24 temperature 10.0 270 > th dose dependent rect. 18 6
7 94.43 temperature 20.0 270 > th dose independent rect. 4 20
11 95.03 temperature 30.0 90 < th dose dependent rect. 1 8
17 95.23 temperature 15.0 270 > th dose independent rect. 3 22
18 95.23 temperature 30.0 270 < th dose dependent rect. 1 2
22 95.43 temperature 30.0 10 < th dose dependent rect. 24 10
28 95.58 temperature 30.0 10 < th dose dependent rect. 24 8
34 95.80 radiation 40.0 270 < th dose independent rect. 10 14
36 95.86 temperature 20.0 90 > th dose independent rect. 6 9
44 96.11 temperature 20.0 270 > th dose independent rect. 19 17
47 96.19 radiation 40.0 270 < th dose independent rect. 5 9
61 96.58 radiation 40.0 270 < th dose independent rect. 18 21
68 96.77 wind 1.0 270 > th dose independent rect. 24 18
71 96.80 radiation 40.0 270 < th dose independent rect. 6 18
72 96.81 radiation 40.0 270 < th dose independent rect. 19 19
74 96.83 temperature 20.0 270 > th dose independent rect. 4 9
85 97.01 atmosphere 1000.0 270 > th dose independent rect. 24 5
94 97.15 wind 7.0 270 < th dose independent rect. 24 18
101 97.23 temperature 20.0 270 > th dose independent rect. 18 6
102 97.24 temperature 20.0 270 > th dose independent rect. 19 4
105 97.29 temperature 15.0 270 > th dose dependent rect. 21 1
116 97.48 wind 7.0 90 < th dose independent rect. 15 15
127 97.60 atmosphere 1015.0 1440 < th dose independent rect. 3 4
131 97.63 atmosphere 1000.0 270 > th dose independent rect. 1 3
133 97.64 radiation 40.0 270 < th dose dependent rect. 9 15
137 97.70 wind 7.0 270 < th dose independent rect. 13 15
148 97.78 wind 7.0 270 < th dose independent rect. 23 20
149 97.78 temperature 15.0 270 > th dose independent rect. 22 23
160 97.87 radiation 10.0 14400 < th dose dependent rect. 22 5
163 97.93 temperature 20.0 10 > th dose independent rect. 6 10
165 97.95 wind 1.0 270 > th dose independent rect. 1 3
170 98.04 radiation 40.0 270 < th dose dependent rect. 7 17
171 98.05 temperature 20.0 270 > th dose independent rect. 21 1
189 98.24 precipitation 0.1 270 < th dose independent rect. 17 7
191 98.24 precipitation 0.1 270 < th dose dependent rect. 17 7
192 98.26 radiation 30.0 90 < th dose independent rect. 15 15
195 98.29 wind 7.0 270 < th dose independent rect. 22 23
201 98.34 atmosphere 995.0 270 > th dose dependent rect. 24 5
202 98.35 temperature 25.0 30 < th dose independent rect. 3 5
222 98.49 wind 1.0 270 > th dose independent rect. 19 4
234 98.53 temperature 20.0 90 > th dose independent rect. 21 18
235 98.54 temperature 25.0 270 < th dose independent rect. 1 2
243 98.59 wind 7.0 10 < th dose independent rect. 16 14
256 98.75 atmosphere 1000.0 10 > th dose independent rect. 1 5
263 98.79 atmosphere 995.0 270 > th dose dependent rect. 1 3
269 98.82 wind 1.0 270 > th dose independent rect. 18 6
271 98.83 atmosphere 995.0 10 > th dose dependent rect. 1 5
272 98.86 radiation 30.0 4320 < th dose independent rect. 3 4
277 98.91 wind 1.0 270 > th dose independent rect. 21 1
284 98.92 temperature 15.0 270 > th dose independent rect. 24 18
285 98.92 atmosphere 1015.0 270 < th dose independent rect. 24 18
288 98.93 humidity 50.0 270 > th dose independent rect. 18 6
289 98.93 radiation 10.0 270 < th dose independent rect. 18 6
297 98.95 radiation 30.0 270 < th dose dependent rect. 18 6
302 98.97 precipitation 0.1 90 < th dose independent rect. 6 9
307 98.97 precipitation 0.1 90 < th dose dependent rect. 6 9
308 98.98 wind 9.0 270 < th dose independent rect. 18 6
311 98.99 atmosphere 995.0 270 > th dose independent rect. 18 6
323 99.04 atmosphere 1015.0 90 < th dose independent rect. 6 9
324 99.04 temperature 10.0 90 > th dose independent rect. 15 15
327 99.07 wind 9.0 90 < th dose independent rect. 6 9
329 99.08 atmosphere 995.0 90 > th dose independent rect. 6 9
337 99.12 radiation 1.0 90 > th dose independent rect. 6 9
345 99.17 atmosphere 995.0 270 > th dose independent rect. 24 18
373 99.28 temperature 10.0 10 > th dose dependent rect. 21 5
374 99.30 radiation 1.0 270 < th dose dependent rect. 24 18
378 99.32 atmosphere 995.0 90 > th dose independent rect. 15 15
380 99.33 atmosphere 995.0 10 > th dose independent rect. 16 14
387 99.37 precipitation 0.1 270 < th dose independent rect. 19 4
388 99.37 precipitation 0.1 270 < th dose dependent rect. 19 4
390 99.39 atmosphere 995.0 10 > th dose independent rect. 6 10
394 99.40 precipitation 0.1 270 < th dose independent rect. 4 21
397 99.40 precipitation 0.1 270 < th dose dependent rect. 4 21
433 99.53 temperature 15.0 270 > th dose independent rect. 23 20
445 99.56 radiation 1.0 270 < th dose dependent rect. 24 13
453 99.58 radiation 1.0 270 < th dose dependent rect. 23 20
455 99.59 radiation 1.0 270 < th dose dependent rect. 24 11
466 99.62 precipitation 0.1 270 < th dose independent rect. 4 9
467 99.62 precipitation 0.1 10 < th dose independent rect. 6 10
470 99.62 precipitation 0.1 270 < th dose dependent rect. 4 9
471 99.62 precipitation 0.1 10 < th dose dependent rect. 6 10
479 99.66 temperature 30.0 270 < th dose independent rect. 18 6
484 99.68 atmosphere 995.0 270 > th dose independent rect. 4 9
485 99.68 atmosphere 1015.0 270 < th dose independent rect. 4 9
486 99.68 temperature 10.0 270 > th dose independent rect. 13 15
487 99.70 temperature 10.0 10 > th dose independent rect. 6 10
489 99.70 atmosphere 1015.0 10 < th dose independent rect. 6 10
490 99.70 temperature 10.0 10 > th dose independent rect. 16 14
491 99.70 radiation 40.0 10 < th dose independent rect. 16 14
494 99.71 precipitation 0.1 270 < th dose independent rect. 24 18
495 99.71 precipitation 0.1 270 < th dose dependent rect. 24 18
501 99.74 precipitation 0.1 270 < th dose independent rect. 5 19
503 99.74 precipitation 0.1 270 < th dose dependent rect. 5 19
518 99.81 wind 9.0 10 < th dose independent rect. 6 10
522 99.82 wind 9.0 270 < th dose independent rect. 4 9
526 99.82 atmosphere 1015.0 270 < th dose independent rect. 23 20
529 99.83 temperature 30.0 270 < th dose independent rect. 19 4
530 99.83 humidity 50.0 270 > th dose independent rect. 19 4
531 99.83 atmosphere 995.0 270 > th dose independent rect. 19 4
532 99.83 radiation 1.0 270 < th dose independent rect. 19 4
540 99.83 radiation 1.0 270 < th dose dependent rect. 19 4
548 99.84 atmosphere 995.0 10 > th dose dependent rect. 3 3
557 99.88 wind 9.0 270 < th dose independent rect. 19 4
598 99.96 temperature 15.0 10 > th dose independent rect. 6 20
615 100.00 radiation 1.0 10 > th dose independent rect. 6 10
633 100.04 wind 5.0 90 < th dose independent rect. 1 5
657 100.11 radiation 40.0 270 < th dose dependent rect. 19 17
666 100.12 radiation 40.0 10 < th dose dependent rect. 15 15
716 100.23 wind 1.0 270 > th dose independent rect. 13 15
729 100.25 radiation 1.0 270 < th dose independent rect. 24 13
730 100.25 radiation 1.0 270 < th dose independent rect. 24 15
735 100.26 wind 7.0 270 < th dose independent rect. 1 3
737 100.26 temperature 10.0 90 > th dose independent rect. 1 5
740 100.26 humidity 50.0 90 > th dose independent rect. 1 5
744 100.26 atmosphere 1010.0 90 < th dose independent rect. 1 5
746 100.26 radiation 20.0 90 < th dose independent rect. 1 5
749 100.26 humidity 90.0 90 < th dose independent rect. 6 9
761 100.28 precipitation 0.1 90 < th dose independent rect. 1 5
762 100.28 radiation 1.0 270 < th dose independent rect. 24 11
763 100.28 precipitation 0.1 90 < th dose dependent rect. 1 5
779 100.33 radiation 40.0 90 < th dose dependent rect. 1 5
791 100.35 atmosphere 1015.0 90 < th dose independent rect. 15 15
813 100.40 temperature 10.0 270 > th dose independent rect. 1 3
816 100.40 humidity 50.0 270 > th dose independent rect. 1 3
820 100.40 atmosphere 1010.0 270 < th dose independent rect. 1 3
822 100.40 radiation 1.0 270 < th dose independent rect. 1 3
830 100.40 radiation 1.0 270 < th dose dependent rect. 1 3
849 100.44 precipitation 0.1 270 < th dose independent rect. 1 2
851 100.44 precipitation 0.1 270 < th dose dependent rect. 1 2
855 100.45 wind 9.0 90 < th dose dependent rect. 6 9
940 100.59 radiation 1.0 90 < th dose dependent sin 2 NA
977 100.66 humidity 90.0 14400 > th dose dependent rect. 2 8