FiT-DB / Search/ Help/ Sample detail

Os02g0754300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L29 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0298) R2 : 0.719
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.32 (0.071) R2dC : 0.651 R2C : 0.638
β3 : 0.967 (0.107) R2dE : 0.0564 R2E : -0.00504
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.534 (0.0656) R2dN8 : 0.0598 R2N8 : 0.00676
σ : 0.55
deviance : 139.71
__
_____
C
peak time of C : 22.2
E
wheather : radiation
threshold : 40.25
memory length : 1809
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.19 0.536 13.2 0.329 2.29 0.807 0.722 2.86 -0.388 22.2 44.56 1803 -- --
139.22 0.55 13.2 0.12 2.25 0.865 0.685 -- -0.42 22.3 40.2 1864 -- --
132.09 0.535 13.2 0.328 2.29 0.799 -- 2.89 -0.384 22.1 45.07 1803 -- --
139.54 0.55 13.3 -0.0946 2.33 0.955 -- -- -0.52 22.2 40.26 1809 -- --
356.47 0.879 13.2 0.407 -- 1.92 -- 3.08 -0.487 -- 45.98 1013 -- --
161.07 0.595 13.2 0.0935 2.32 -- 0.753 -- -0.317 22 -- -- -- --
163.29 0.598 13.2 0.0645 2.32 -- -- -- -0.318 22 -- -- -- --
357.7 0.881 13.3 0.0437 -- 1.61 -- -- -0.606 -- 40.58 1014 -- --
139.71 0.55 13.3 -- 2.32 0.967 -- -- -0.534 22.2 40.25 1809 -- --
487.78 1.03 13.2 0.093 -- -- -- -- -0.317 -- -- -- -- --
163.4 0.598 13.2 -- 2.32 -- -- -- -0.326 22 -- -- -- --
356.34 0.879 13.3 -- -- 1.64 -- -- -0.69 -- 40.7 1013 -- --
488 1.03 13.2 -- -- -- -- -- -0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.48 radiation 40.0 270 < th dose independent rect. 6 18
2 121.69 radiation 40.0 270 < th dose independent rect. 5 7
4 122.02 radiation 40.0 270 < th dose independent rect. 5 20
6 122.50 temperature 20.0 270 > th dose independent rect. 5 7
13 123.49 temperature 10.0 270 > th dose dependent rect. 10 9
22 124.43 temperature 30.0 270 < th dose independent rect. 5 7
23 124.45 temperature 30.0 270 < th dose independent rect. 6 17
47 125.80 temperature 30.0 90 < th dose independent rect. 8 17
50 125.95 radiation 40.0 270 < th dose dependent rect. 6 18
60 126.42 wind 7.0 270 < th dose independent rect. 12 17
68 126.76 temperature 30.0 270 < th dose independent rect. 6 5
77 127.06 temperature 15.0 270 > th dose independent rect. 6 17
82 127.27 temperature 30.0 270 < th dose independent rect. 18 17
95 127.74 temperature 30.0 270 < th dose dependent rect. 6 17
111 128.30 temperature 25.0 270 > th dose independent rect. 10 8
130 128.69 radiation 40.0 270 < th dose dependent rect. 6 6
133 128.76 temperature 10.0 270 > th dose dependent rect. 24 17
137 128.88 wind 5.0 270 < th dose independent rect. 23 7
168 129.46 temperature 15.0 10 > th dose dependent rect. 12 9
178 129.63 wind 7.0 270 < th dose independent rect. 24 17
196 129.80 precipitation 0.1 270 < th dose independent rect. 12 17
197 129.80 precipitation 0.1 270 < th dose dependent rect. 12 17
199 129.90 precipitation 0.1 270 < th dose independent rect. 23 7
200 129.90 precipitation 0.1 270 < th dose dependent rect. 23 7
209 130.11 wind 7.0 270 < th dose independent rect. 9 22
222 130.28 temperature 10.0 270 > th dose dependent rect. 11 18
225 130.33 temperature 10.0 270 > th dose independent rect. 23 7
226 130.33 temperature 30.0 270 < th dose independent rect. 23 7
227 130.33 humidity 50.0 270 > th dose independent rect. 23 7
230 130.33 atmosphere 995.0 270 > th dose independent rect. 23 7
231 130.33 radiation 20.0 270 < th dose independent rect. 23 7
240 130.40 radiation 10.0 270 < th dose independent rect. 16 8
243 130.44 radiation 1.0 270 < th dose dependent sin 6 NA
246 130.45 radiation 10.0 270 < th dose dependent rect. 23 8
247 130.47 radiation 40.0 270 < th dose dependent rect. 23 7
248 130.48 radiation 20.0 270 < th dose dependent rect. 16 8
261 130.59 precipitation 0.1 270 < th dose independent rect. 5 7
262 130.59 precipitation 0.1 270 < th dose dependent rect. 5 7
269 130.66 radiation 40.0 270 < th dose dependent rect. 15 10
273 130.70 atmosphere 1015.0 270 < th dose independent rect. 23 7
274 130.70 radiation 1.0 270 < th dose independent rect. 23 12
280 130.71 radiation 1.0 270 < th dose dependent rect. 23 12
283 130.73 wind 9.0 270 < th dose independent rect. 5 7
285 130.73 atmosphere 995.0 270 > th dose independent rect. 5 7
286 130.73 atmosphere 1015.0 270 < th dose independent rect. 5 7
287 130.73 temperature 10.0 270 > th dose independent rect. 12 17
315 131.04 humidity 50.0 270 > th dose independent rect. 16 8
327 131.10 humidity 90.0 14400 > th dose dependent rect. 5 8
346 131.29 wind 9.0 270 < th dose dependent rect. 23 7
358 131.37 precipitation 0.1 270 < th dose independent rect. 11 19
359 131.37 precipitation 0.1 270 < th dose dependent rect. 11 19
367 131.41 radiation 1.0 270 > th dose independent rect. 5 7
389 131.50 temperature 25.0 270 > th dose dependent rect. 10 18
421 131.67 radiation 40.0 270 < th dose independent rect. 18 17
427 131.71 temperature 15.0 270 > th dose independent rect. 19 16
429 131.72 radiation 1.0 270 > th dose independent rect. 6 5
430 131.72 temperature 25.0 270 > th dose dependent sin 22 NA
431 131.72 temperature 30.0 270 < th dose dependent rect. 6 8
439 131.75 wind 9.0 270 < th dose independent rect. 6 17
450 131.80 temperature 20.0 10 > th dose independent rect. 8 4
466 131.86 radiation 40.0 270 < th dose independent rect. 17 21
480 131.88 wind 1.0 270 > th dose independent rect. 10 9
487 131.92 radiation 1.0 270 < th dose independent sin 6 NA
493 131.96 radiation 1.0 270 > th dose independent sin 6 NA
494 131.97 wind 7.0 270 < th dose independent rect. 11 7
518 132.12 temperature 25.0 10 > th dose independent rect. 12 8
564 132.33 precipitation 0.1 270 < th dose independent rect. 24 17
566 132.33 precipitation 0.1 270 < th dose dependent rect. 24 17
570 132.35 temperature 10.0 270 > th dose independent rect. 17 7
574 132.35 temperature 10.0 270 > th dose independent rect. 24 17
575 132.35 atmosphere 1015.0 270 < th dose independent rect. 24 17
599 132.42 humidity 90.0 14400 < th dose independent rect. 20 4
604 132.43 precipitation 0.1 270 < th dose independent rect. 6 17
606 132.43 precipitation 0.1 270 < th dose dependent rect. 6 17
622 132.52 humidity 80.0 14400 > th dose dependent rect. 21 1
635 132.59 wind 9.0 270 < th dose independent rect. 17 7
658 132.64 humidity 90.0 14400 > th dose dependent rect. 5 21
659 132.65 humidity 90.0 14400 > th dose independent rect. 22 1
660 132.65 humidity 90.0 14400 > th dose independent rect. 21 4
661 132.65 temperature 30.0 270 < th dose independent rect. 17 7
674 132.73 humidity 80.0 14400 < th dose independent rect. 16 4
719 132.91 temperature 20.0 10 > th dose independent rect. 8 6
729 132.92 atmosphere 1015.0 1440 < th dose independent rect. 3 6
731 132.92 atmosphere 995.0 270 > th dose independent rect. 6 17
739 132.95 atmosphere 995.0 270 > th dose independent rect. 17 7
744 132.98 humidity 50.0 14400 > th dose independent rect. 3 6
770 133.07 humidity 90.0 90 < th dose independent rect. 6 7
788 133.12 humidity 80.0 14400 > th dose independent rect. 16 4
790 133.13 temperature 25.0 270 > th dose dependent rect. 24 18
830 133.18 humidity 90.0 14400 > th dose dependent rect. 19 19
841 133.22 humidity 90.0 14400 > th dose independent rect. 20 18
847 133.23 wind 1.0 270 > th dose independent rect. 12 17
897 133.34 humidity 50.0 270 > th dose independent rect. 6 17
907 133.37 humidity 80.0 14400 > th dose independent rect. 17 2
928 133.43 humidity 90.0 14400 < th dose independent rect. 19 6
930 133.43 precipitation 0.1 270 < th dose independent rect. 10 9
933 133.43 precipitation 0.1 270 < th dose dependent rect. 10 9
959 133.48 wind 7.0 43200 > th dose independent rect. 11 1
972 133.52 wind 1.0 270 > th dose independent rect. 5 7
974 133.52 radiation 1.0 270 > th dose independent rect. 11 18
977 133.52 humidity 90.0 14400 > th dose dependent rect. 1 23
979 133.53 temperature 10.0 270 > th dose independent rect. 10 9
980 133.53 atmosphere 1015.0 270 < th dose independent rect. 10 9
981 133.53 wind 9.0 270 < th dose independent rect. 19 15
983 133.53 atmosphere 995.0 270 > th dose independent rect. 19 15
998 133.56 radiation 1.0 270 > th dose independent rect. 11 8