BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0754300 Os02g0754300|AK099805
         (165 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65220.1  | chr5:26061301-26062506 FORWARD LENGTH=174          145   7e-36

>AT5G65220.1 | chr5:26061301-26062506 FORWARD LENGTH=174
          Length = 173

 Score =  145 bits (367), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 90/97 (92%)

Query: 65  MAKREQELEEIRAMPTEKIEEEVVDLKGELFMLRLKRSARQEFKSSEFGRMRKRIARMLT 124
           M+KRE EL+EIR+  TE+++EEVVDLKGELFMLRL++SAR EFKSS+F RM+K++ARMLT
Sbjct: 60  MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLT 119

Query: 125 VKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRE 161
           VKREREI++GI KRLSRKLDR+WK+SIV RPPPSL++
Sbjct: 120 VKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKK 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,371,093
Number of extensions: 71596
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)