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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0734400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Caleosin related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0437) R2 : 0.125
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.756 (0.111) R2dC : 0.0884 R2C : 0.0734
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.421 (0.092) R2dN8 : 0.0518 R2N8 : 0.0369
σ : 0.825
deviance : 310.72
__
_____
C
peak time of C : 3.89
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.35 0.799 3.2 -0.656 0.593 -1.09 -0.445 4.1 -0.421 2.97 1.039 291 -- --
296.36 0.808 3.15 -0.544 0.577 -0.429 -0.863 -- -0.438 3.8 1.397 275 -- --
289.99 0.793 3.2 -0.646 0.595 -1.08 -- 4.27 -0.42 3.03 1.045 290 -- --
297.14 0.803 3.13 -0.52 0.485 -0.524 -- -- -0.385 3.51 1.862 170 -- --
301.93 0.809 3.16 -0.708 -- -1.22 -- 3.27 -0.283 -- 1.594 208 -- --
303.85 0.817 3.16 -0.463 0.769 -- -0.708 -- -0.475 3.89 -- -- -- --
305.31 0.818 3.15 -0.453 0.764 -- -- -- -0.471 3.88 -- -- -- --
303.82 0.812 3.14 -0.665 -- -0.88 -- -- -0.392 -- 1.8 128 -- --
305.83 0.814 3.14 -- 0.517 -0.441 -- -- -0.375 3.3 1.864 166 -- --
337.39 0.858 3.16 -0.421 -- -- -- -- -0.451 -- -- -- -- --
310.72 0.825 3.14 -- 0.756 -- -- -- -0.421 3.89 -- -- -- --
315.27 0.827 3.13 -- -- -0.698 -- -- -0.353 -- 1.966 110 -- --
342.07 0.863 3.15 -- -- -- -- -- -0.404 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.83 atmosphere 1005.0 90 < th dose independent rect. 5 2
8 286.34 wind 1.0 270 > th dose independent rect. 3 23
9 286.42 wind 7.0 90 > th dose independent rect. 21 1
15 286.68 wind 7.0 90 > th dose dependent rect. 21 1
18 286.74 wind 7.0 30 > th dose independent rect. 20 6
28 286.77 wind 7.0 30 > th dose dependent rect. 21 5
45 286.85 wind 7.0 30 > th dose independent rect. 20 12
49 286.86 wind 7.0 30 > th dose dependent rect. 20 12
70 287.13 precipitation 0.1 90 > th dose independent rect. 21 1
72 287.13 precipitation 0.1 90 > th dose dependent rect. 21 1
75 287.26 atmosphere 1005.0 10 < th dose independent rect. 5 1
99 287.68 atmosphere 1005.0 720 > th dose independent rect. 21 2
101 287.84 precipitation 0.1 10 > th dose independent rect. 21 1
112 287.84 precipitation 0.1 10 > th dose dependent rect. 21 1
122 287.92 atmosphere 1005.0 720 > th dose independent rect. 21 4
123 288.05 wind 5.0 10 < th dose dependent rect. 14 16
129 288.30 wind 1.0 43200 < th dose independent rect. 4 21
130 288.35 atmosphere 1005.0 720 > th dose dependent rect. 21 4
132 288.42 wind 1.0 43200 > th dose independent rect. 4 23
134 288.62 wind 1.0 43200 < th dose independent rect. 4 23
135 288.65 precipitation 0.1 720 > th dose independent rect. 20 6
136 288.65 precipitation 0.1 720 > th dose dependent rect. 20 6
138 288.68 wind 1.0 43200 > th dose independent rect. 4 21
155 288.88 wind 7.0 720 > th dose dependent rect. 21 1
159 288.97 wind 1.0 43200 > th dose independent rect. 2 23
163 289.05 wind 1.0 1440 > th dose independent rect. 10 2
172 289.15 wind 1.0 270 > th dose independent rect. 18 14
185 289.32 wind 1.0 43200 < th dose dependent rect. 4 20
186 289.35 wind 7.0 720 > th dose independent rect. 21 1
187 289.35 wind 1.0 43200 > th dose independent rect. 10 22
197 289.50 humidity 70.0 43200 > th dose dependent rect. 4 2
199 289.52 precipitation 0.1 720 > th dose independent rect. 20 1
201 289.52 precipitation 0.1 720 > th dose dependent rect. 20 1
206 289.55 temperature 25.0 270 < th dose independent rect. 23 5
209 289.58 wind 1.0 14400 < th dose dependent rect. 9 3
218 289.61 wind 1.0 1440 < th dose independent rect. 10 2
229 289.70 atmosphere 1005.0 10 > th dose independent rect. 3 1
231 289.74 wind 1.0 270 < th dose independent rect. 23 17
235 289.79 radiation 20.0 90 > th dose independent rect. 6 1
249 289.79 wind 1.0 270 < th dose independent rect. 23 22
250 289.79 radiation 20.0 90 > th dose dependent rect. 6 1
295 289.94 wind 3.0 30 < th dose dependent rect. 11 19
302 290.03 wind 5.0 10 < th dose dependent rect. 20 10
310 290.06 wind 5.0 90 > th dose independent rect. 6 1
313 290.06 wind 5.0 90 > th dose dependent rect. 6 1
319 290.08 wind 1.0 14400 > th dose independent rect. 9 3
329 290.15 wind 1.0 1440 < th dose independent rect. 6 6
332 290.22 wind 1.0 30 < th dose dependent rect. 14 2
334 290.23 wind 1.0 30 < th dose independent rect. 15 1
335 290.23 humidity 90.0 90 > th dose independent rect. 14 1
343 290.23 humidity 90.0 90 > th dose dependent rect. 14 1
352 290.24 temperature 25.0 30 < th dose independent rect. 24 8
358 290.25 temperature 25.0 90 < th dose independent rect. 1 5
359 290.26 wind 1.0 1440 > th dose independent rect. 6 6
362 290.27 wind 1.0 43200 > th dose independent rect. 16 22
367 290.29 wind 1.0 14400 < th dose independent rect. 9 3
370 290.29 wind 1.0 43200 > th dose independent rect. 13 23
376 290.30 wind 7.0 720 > th dose dependent rect. 21 3
388 290.35 wind 1.0 43200 > th dose independent no NA NA
391 290.35 wind 1.0 4320 < th dose dependent rect. 6 5
392 290.38 wind 1.0 270 > th dose independent no NA NA
394 290.39 wind 1.0 43200 > th dose independent rect. 20 23
395 290.40 wind 1.0 43200 > th dose independent rect. 7 23
430 290.47 wind 1.0 4320 > th dose independent rect. 6 3
431 290.47 wind 3.0 10 < th dose dependent rect. 15 18
439 290.50 humidity 80.0 43200 < th dose independent rect. 11 19
441 290.51 temperature 15.0 30 > th dose dependent rect. 3 1
443 290.53 humidity 70.0 43200 > th dose dependent rect. 17 14
450 290.57 wind 1.0 43200 > th dose independent rect. 22 23
451 290.58 wind 1.0 4320 < th dose independent rect. 6 3
456 290.61 precipitation 0.1 720 > th dose independent rect. 18 4
474 290.67 wind 5.0 90 > th dose dependent rect. 4 3
477 290.67 humidity 50.0 30 > th dose dependent rect. 14 16
478 290.68 wind 1.0 270 < th dose independent rect. 23 12
481 290.70 wind 1.0 270 > th dose independent rect. 12 23
484 290.71 wind 5.0 90 > th dose independent rect. 4 3
493 290.74 temperature 25.0 270 < th dose independent rect. 1 2
500 290.75 humidity 70.0 43200 > th dose dependent rect. 21 1
503 290.76 precipitation 0.1 90 > th dose independent rect. 14 1
508 290.76 precipitation 0.1 90 > th dose dependent rect. 14 1
510 290.76 wind 1.0 1440 < th dose dependent rect. 10 2
526 290.81 wind 1.0 270 < th dose independent rect. 9 23
534 290.84 wind 3.0 30 > th dose independent rect. 21 13
542 290.87 atmosphere 1015.0 14400 > th dose independent rect. 14 4
548 290.88 atmosphere 1015.0 14400 > th dose dependent rect. 13 7
549 290.90 atmosphere 1000.0 10 > th dose dependent rect. 3 1
560 290.92 radiation 1.0 1440 < th dose dependent rect. 15 1
566 290.94 radiation 1.0 1440 > th dose independent rect. 9 7
567 290.94 wind 1.0 43200 > th dose independent rect. 13 16
571 290.95 wind 3.0 14400 < th dose dependent rect. 4 12
573 290.96 temperature 20.0 30 > th dose independent rect. 3 1
575 290.96 humidity 70.0 43200 > th dose dependent sin 13 NA
581 290.98 wind 3.0 10 < th dose independent rect. 14 16
586 290.98 humidity 70.0 43200 > th dose dependent rect. 18 6
595 291.00 wind 1.0 43200 < th dose independent rect. 9 23
600 291.01 wind 1.0 270 < th dose independent rect. 5 23
612 291.03 humidity 70.0 43200 > th dose dependent rect. 17 9
617 291.04 wind 1.0 270 < th dose independent rect. 7 23
618 291.04 humidity 70.0 43200 > th dose dependent rect. 20 4
646 291.09 wind 3.0 30 < th dose dependent rect. 3 1
654 291.10 wind 3.0 30 < th dose dependent rect. 7 23
681 291.16 temperature 25.0 10 > th dose independent rect. 21 1
723 291.23 wind 1.0 270 < th dose independent rect. 23 9
743 291.27 wind 1.0 270 < th dose independent rect. 12 23
747 291.28 radiation 1.0 1440 < th dose independent rect. 9 7
759 291.30 wind 1.0 270 < th dose independent no NA NA
765 291.30 wind 3.0 14400 < th dose dependent rect. 23 17
767 291.31 humidity 80.0 43200 > th dose independent rect. 11 19
769 291.31 wind 1.0 4320 < th dose dependent rect. 6 3
775 291.32 wind 1.0 270 < th dose independent rect. 14 23
778 291.32 wind 1.0 30 > th dose dependent rect. 21 13
780 291.32 wind 3.0 270 < th dose dependent rect. 9 21
821 291.40 wind 1.0 43200 < th dose independent rect. 15 23
837 291.44 wind 1.0 270 > th dose independent sin 10 NA
838 291.44 wind 1.0 43200 < th dose independent no NA NA
839 291.44 wind 3.0 14400 < th dose independent rect. 23 17
851 291.45 wind 5.0 10 < th dose dependent rect. 20 13
908 291.52 wind 3.0 270 < th dose dependent rect. 7 23
921 291.54 wind 3.0 10 < th dose dependent rect. 11 22
951 291.59 wind 1.0 270 < th dose dependent rect. 24 1
957 291.60 wind 1.0 270 > th dose independent rect. 15 23
959 291.60 wind 1.0 43200 < th dose dependent rect. 6 6
996 291.64 wind 1.0 43200 < th dose independent rect. 21 23
997 291.64 wind 3.0 14400 < th dose dependent sin 3 NA