FiT-DB / Search/ Help/ Sample detail

Os02g0730500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0227) R2 : 0.496
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.23 (0.0583) R2dC : 0.49 R2C : 0.491
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0928 (0.0478) R2dN8 : 0.00538 R2N8 : 0.00603
σ : 0.428
deviance : 83.83
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.56 0.4 11.5 -0.349 0.977 -0.855 0.54 1.02 -0.3 16.6 30.3 87 -- --
73.95 0.404 11.4 -0.163 0.99 -0.997 0.201 -- -0.231 16.8 43.26 63 -- --
73.23 0.399 11.5 -0.323 0.991 -0.871 -- 0.927 -0.284 16.6 30.85 79 -- --
73.66 0.4 11.4 -0.179 0.969 -0.884 -- -- -0.26 16.7 30.2 70 -- --
109.98 0.488 11.5 -0.504 -- -1.97 -- 0.749 -0.408 -- 98.75 113 -- --
83.45 0.428 11.4 0.0271 1.23 -- 0.355 -- -0.0913 16.3 -- -- -- --
83.8 0.429 11.4 0.0305 1.23 -- -- -- -0.0894 16.3 -- -- -- --
110.41 0.489 11.5 -0.397 -- -1.96 -- -- -0.379 -- 110.5 111 -- --
74.47 0.402 11.4 -- 1.01 -0.823 -- -- -0.229 16.6 30.3 67 -- --
165.23 0.601 11.4 -0.0185 -- -- -- -- -0.122 -- -- -- -- --
83.83 0.428 11.4 -- 1.23 -- -- -- -0.0928 16.3 -- -- -- --
114.3 0.498 11.4 -- -- -1.82 -- -- -0.32 -- 56.62 111 -- --
165.24 0.6 11.4 -- -- -- -- -- -0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.11 temperature 10.0 10 > th dose dependent rect. 9 18
16 58.72 temperature 15.0 10 > th dose dependent rect. 9 6
32 60.48 temperature 15.0 270 > th dose dependent rect. 9 1
57 61.94 temperature 30.0 90 < th dose dependent rect. 3 16
68 62.15 temperature 15.0 270 > th dose dependent rect. 8 3
95 62.80 humidity 80.0 10 < th dose independent rect. 9 6
101 62.92 temperature 15.0 30 > th dose dependent rect. 20 19
152 64.11 temperature 10.0 270 > th dose dependent rect. 20 16
173 64.39 temperature 10.0 270 > th dose dependent rect. 17 21
176 64.43 temperature 20.0 10 > th dose independent rect. 9 6
190 64.60 humidity 90.0 270 < th dose independent rect. 9 1
306 65.86 humidity 90.0 270 < th dose independent rect. 8 3
327 66.07 temperature 15.0 90 > th dose independent rect. 9 18
337 66.15 temperature 20.0 270 > th dose independent rect. 9 1
353 66.32 radiation 1.0 10 > th dose independent rect. 9 6
355 66.33 wind 9.0 10 < th dose independent rect. 9 6
367 66.45 temperature 10.0 43200 > th dose independent rect. 10 6
370 66.46 atmosphere 1010.0 30 < th dose independent rect. 9 6
377 66.49 humidity 90.0 10 < th dose dependent rect. 9 6
399 66.66 radiation 1.0 270 > th dose independent rect. 9 1
400 66.66 wind 1.0 30 > th dose independent rect. 9 6
403 66.67 temperature 10.0 10 > th dose independent rect. 9 6
405 66.67 atmosphere 995.0 10 > th dose independent rect. 9 6
407 66.67 precipitation 0.1 10 < th dose independent rect. 9 6
409 66.67 temperature 10.0 10 > th dose independent rect. 15 18
410 66.67 precipitation 0.1 10 < th dose dependent rect. 9 6
433 66.78 temperature 15.0 270 > th dose independent rect. 6 21
434 66.79 temperature 10.0 1440 > th dose independent rect. 10 6
437 66.79 temperature 10.0 1440 > th dose independent rect. 16 18
448 66.83 radiation 1.0 270 < th dose independent rect. 3 15
450 66.84 wind 9.0 30 < th dose independent rect. 15 18
458 66.89 radiation 1.0 270 < th dose dependent rect. 3 15
459 66.90 humidity 50.0 30 > th dose independent rect. 15 18
477 67.08 wind 9.0 270 < th dose dependent rect. 9 1
485 67.14 temperature 15.0 10 > th dose dependent rect. 24 15
496 67.21 wind 5.0 270 < th dose independent rect. 9 1
499 67.22 atmosphere 995.0 10 > th dose independent rect. 15 18
511 67.28 radiation 40.0 30 < th dose independent rect. 15 18
527 67.38 radiation 40.0 90 < th dose independent rect. 4 15
541 67.47 wind 9.0 270 < th dose dependent rect. 7 6
590 67.71 precipitation 0.1 10 < th dose independent rect. 15 18
594 67.71 precipitation 0.1 10 < th dose dependent rect. 15 18
600 67.74 temperature 30.0 30 < th dose dependent sin 1 NA
617 67.80 radiation 30.0 90 < th dose independent rect. 3 6
619 67.81 humidity 50.0 30 > th dose independent rect. 9 6
657 67.95 wind 9.0 270 < th dose dependent rect. 8 3
671 67.99 humidity 60.0 90 > th dose dependent rect. 4 15
686 68.06 radiation 30.0 90 < th dose independent rect. 13 20
693 68.08 temperature 10.0 10 > th dose dependent sin 1 NA
705 68.10 precipitation 0.1 90 < th dose independent rect. 9 18
707 68.10 precipitation 0.1 90 < th dose dependent rect. 9 18
711 68.11 radiation 40.0 90 < th dose dependent rect. 13 20
712 68.12 temperature 20.0 270 > th dose independent rect. 8 3
714 68.12 wind 7.0 90 < th dose independent rect. 9 18
717 68.14 temperature 10.0 90 > th dose dependent sin 3 NA
730 68.17 radiation 40.0 90 < th dose independent rect. 11 22
736 68.18 wind 5.0 270 < th dose independent rect. 8 3
738 68.18 wind 9.0 30 < th dose dependent rect. 9 6
759 68.21 radiation 1.0 270 > th dose independent rect. 17 21
760 68.21 humidity 90.0 270 < th dose dependent rect. 9 1
768 68.24 temperature 30.0 90 < th dose independent rect. 3 6
781 68.27 temperature 30.0 30 < th dose independent rect. 15 18
784 68.27 radiation 40.0 270 < th dose dependent rect. 2 15
810 68.33 radiation 40.0 270 < th dose independent rect. 11 20
823 68.37 precipitation 0.1 270 < th dose independent rect. 9 1
826 68.37 atmosphere 1015.0 10 < th dose independent rect. 15 18
827 68.37 precipitation 0.1 270 < th dose dependent rect. 9 1
860 68.46 wind 5.0 90 < th dose independent rect. 3 6
867 68.47 radiation 1.0 270 < th dose independent rect. 3 11
875 68.49 wind 5.0 270 < th dose independent rect. 3 3
882 68.50 precipitation 0.1 270 < th dose independent rect. 6 21
885 68.50 precipitation 0.1 270 < th dose dependent rect. 6 21
889 68.51 radiation 40.0 90 < th dose dependent rect. 4 15
890 68.52 humidity 50.0 270 > th dose independent rect. 9 1
901 68.55 temperature 30.0 90 < th dose independent rect. 3 16
906 68.56 humidity 70.0 90 > th dose independent rect. 3 16
916 68.58 atmosphere 995.0 270 > th dose independent rect. 9 1
917 68.58 atmosphere 1015.0 270 < th dose independent rect. 9 1
920 68.58 temperature 10.0 270 > th dose independent rect. 10 23
930 68.60 radiation 40.0 10 < th dose independent rect. 12 21
957 68.67 radiation 1.0 270 > th dose dependent rect. 9 1
958 68.67 radiation 1.0 270 < th dose dependent rect. 3 11
982 68.71 humidity 60.0 90 > th dose independent rect. 3 6
993 68.72 atmosphere 1015.0 30 < th dose dependent rect. 9 6