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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0724500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0362) R2 : 0.518
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.858 (0.109) R2dC : 0.0949 R2C : 0.229
β3 : 1.58 (0.146) R2dE : 0.185 R2E : 0.353
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.504 (0.0775) R2dN8 : 0.0624 R2N8 : 0.0914
σ : 0.669
deviance : 206.12
__
_____
C
peak time of C : 8.23
E
wheather : atmosphere
threshold : 1006
memory length : 246
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.03
open length of G : 3.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.34 0.657 3.45 -0.558 0.846 1.6 -0.784 0.164 0.443 8.28 1006 240 3.03 4.12
195.32 0.651 3.45 -0.566 0.853 1.61 -0.737 -- 0.441 8.3 1006 242 3.02 4.02
196.77 0.653 3.45 -0.614 0.856 1.59 -- -0.413 0.436 8.22 1006 244 3.03 3.98
196.99 0.654 3.44 -0.586 0.854 1.59 -- -- 0.445 8.25 1006 246 3 4.03
220.65 0.692 3.5 -0.615 -- 2.12 -- -0.147 0.336 -- 1006 290 2.68 4.34
243.1 0.731 3.38 -0.494 1.58 -- -0.735 -- 0.656 7.45 -- -- -- --
244.59 0.732 3.38 -0.511 1.58 -- -- -- 0.658 7.43 -- -- -- --
215.37 0.684 3.48 -0.561 -- 2.13 -- -- 0.362 -- 1006 313 2.52 4.82
206.12 0.669 3.43 -- 0.858 1.58 -- -- 0.504 8.23 1006 246 3.03 3.98
377.8 0.908 3.41 -0.486 -- -- -- -- 0.683 -- -- -- -- --
251.48 0.742 3.37 -- 1.58 -- -- -- 0.715 7.45 -- -- -- --
224.96 0.699 3.47 -- -- 2.08 -- -- 0.43 -- 1006 310 2.49 5.02
384.03 0.915 3.4 -- -- -- -- -- 0.737 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.90 atmosphere 1005.0 270 > th dose independent rect. 3 4
6 203.51 atmosphere 1005.0 10 > th dose independent rect. 4 5
24 209.46 atmosphere 1005.0 90 > th dose dependent rect. 5 3
32 211.49 atmosphere 1000.0 10 > th dose dependent rect. 4 5
64 213.94 temperature 25.0 10 > th dose independent rect. 5 2
66 214.26 temperature 20.0 30 > th dose dependent rect. 4 3
79 214.92 radiation 20.0 10 < th dose independent rect. 4 8
84 215.05 radiation 20.0 10 < th dose independent rect. 4 6
90 215.29 temperature 20.0 10 > th dose independent rect. 4 5
92 215.47 humidity 90.0 10 < th dose dependent rect. 6 1
97 215.61 temperature 25.0 1440 > th dose dependent rect. 4 3
116 216.28 radiation 10.0 270 < th dose independent rect. 3 6
126 216.76 humidity 90.0 10 < th dose independent rect. 6 1
127 216.76 atmosphere 1000.0 30 > th dose independent rect. 7 23
128 216.79 temperature 15.0 10 > th dose dependent rect. 4 5
129 216.84 radiation 10.0 270 < th dose independent rect. 3 8
134 216.94 radiation 1.0 90 > th dose independent rect. 4 3
148 216.98 temperature 20.0 270 > th dose dependent rect. 2 5
153 217.20 radiation 20.0 30 < th dose dependent rect. 6 1
171 217.49 wind 1.0 30 > th dose dependent rect. 6 1
176 217.56 radiation 10.0 90 < th dose independent rect. 6 1
181 217.63 wind 9.0 1440 < th dose independent rect. 7 1
182 217.63 temperature 10.0 1440 > th dose independent rect. 7 1
186 217.63 temperature 30.0 1440 < th dose independent rect. 7 1
190 217.63 humidity 50.0 1440 > th dose independent rect. 7 1
195 217.63 atmosphere 995.0 1440 > th dose independent rect. 7 1
196 217.63 atmosphere 1015.0 1440 < th dose independent rect. 7 1
197 217.63 temperature 10.0 1440 > th dose independent rect. 8 23
200 217.65 temperature 25.0 270 > th dose independent rect. 6 1
203 217.67 atmosphere 1015.0 30 < th dose dependent rect. 6 1
206 217.70 radiation 1.0 10 > th dose dependent rect. 6 1
216 217.83 wind 7.0 10 < th dose dependent rect. 4 5
219 217.92 radiation 10.0 10 < th dose independent rect. 6 1
231 218.08 wind 5.0 30 < th dose independent rect. 6 1
234 218.08 temperature 10.0 30 > th dose independent rect. 6 1
236 218.08 temperature 30.0 30 < th dose independent rect. 6 1
237 218.08 humidity 50.0 30 > th dose independent rect. 6 1
241 218.08 atmosphere 1015.0 30 < th dose independent rect. 6 1
245 218.08 precipitation 0.1 30 < th dose independent rect. 6 1
246 218.08 temperature 10.0 30 > th dose independent rect. 7 23
247 218.08 precipitation 0.1 30 < th dose dependent rect. 6 1
249 218.10 wind 1.0 90 > th dose independent rect. 7 23
262 218.18 wind 1.0 30 > th dose independent rect. 6 1
271 218.38 temperature 30.0 720 < th dose independent rect. 18 1
278 218.53 wind 1.0 30 > th dose independent rect. 9 21
279 218.53 wind 9.0 30 < th dose dependent rect. 6 1
287 218.69 humidity 50.0 30 > th dose dependent rect. 6 1
318 219.01 wind 9.0 30 < th dose independent rect. 7 23
319 219.06 radiation 20.0 10 < th dose independent rect. 4 21
363 219.35 radiation 20.0 90 < th dose independent rect. 3 22
367 219.36 precipitation 0.1 30 < th dose independent rect. 7 23
368 219.36 precipitation 0.1 30 < th dose dependent rect. 7 23
394 219.68 radiation 20.0 10 < th dose independent rect. 6 6
398 219.71 temperature 15.0 10 > th dose independent rect. 9 19
406 219.83 radiation 30.0 14400 < th dose independent rect. 16 2
408 219.85 precipitation 0.1 10 < th dose independent rect. 4 5
409 219.85 precipitation 0.1 10 < th dose dependent rect. 4 5
410 219.86 wind 5.0 10 < th dose independent rect. 4 5
412 219.94 radiation 30.0 14400 < th dose independent rect. 16 12
418 219.97 temperature 25.0 10 > th dose dependent rect. 1 6
425 220.01 temperature 10.0 10 > th dose independent rect. 4 5
427 220.01 temperature 30.0 10 < th dose independent rect. 4 5
428 220.01 humidity 50.0 10 > th dose independent rect. 4 5
430 220.01 atmosphere 995.0 10 > th dose independent rect. 4 5
431 220.01 atmosphere 1015.0 10 < th dose independent rect. 4 5
446 220.12 wind 9.0 10 < th dose independent rect. 9 19
451 220.14 radiation 10.0 90 < th dose independent rect. 6 5
454 220.15 temperature 25.0 4320 > th dose independent rect. 5 2
455 220.15 radiation 20.0 30 < th dose independent rect. 6 3
464 220.20 radiation 30.0 14400 < th dose independent rect. 16 9
465 220.21 radiation 30.0 14400 < th dose independent rect. 16 6
473 220.26 atmosphere 1005.0 10 > th dose independent rect. 24 9
517 220.57 radiation 20.0 270 < th dose dependent rect. 3 8
519 220.59 atmosphere 1005.0 720 > th dose independent rect. 19 12
520 220.59 radiation 40.0 14400 > th dose dependent rect. 15 18
526 220.67 wind 5.0 270 < th dose independent rect. 3 4
540 220.85 temperature 25.0 10 > th dose dependent rect. 23 8
556 220.97 temperature 25.0 4320 < th dose independent rect. 5 2
564 221.01 temperature 30.0 30 < th dose dependent rect. 6 1
567 221.03 radiation 10.0 270 < th dose independent rect. 15 18
568 221.03 precipitation 0.1 10 < th dose independent rect. 9 19
571 221.03 precipitation 0.1 10 < th dose dependent rect. 9 19
574 221.04 radiation 10.0 270 < th dose dependent rect. 3 6
576 221.05 radiation 10.0 270 < th dose independent rect. 3 15
586 221.14 radiation 1.0 90 > th dose independent sin 10 NA
595 221.22 humidity 90.0 43200 > th dose independent rect. 5 1
650 221.36 radiation 40.0 14400 > th dose dependent rect. 8 1
661 221.38 wind 5.0 43200 < th dose independent rect. 12 2
682 221.41 radiation 1.0 90 < th dose independent sin 10 NA
692 221.48 humidity 90.0 43200 > th dose dependent rect. 20 1
693 221.48 humidity 90.0 43200 > th dose dependent rect. 20 3
701 221.52 wind 5.0 270 < th dose dependent rect. 4 1
707 221.58 humidity 90.0 43200 > th dose independent rect. 4 3
711 221.58 temperature 25.0 1440 > th dose dependent rect. 18 13
712 221.60 humidity 90.0 43200 > th dose dependent rect. 22 1
718 221.64 temperature 25.0 1440 > th dose dependent rect. 15 16
723 221.67 atmosphere 995.0 10 > th dose independent rect. 9 19
727 221.68 precipitation 0.1 270 < th dose independent rect. 3 4
728 221.68 precipitation 0.1 270 < th dose dependent rect. 3 4
729 221.68 radiation 40.0 10 < th dose dependent rect. 4 6
735 221.72 wind 5.0 43200 > th dose independent rect. 12 2
736 221.73 radiation 20.0 10 < th dose independent rect. 4 18
752 221.82 temperature 25.0 1440 > th dose dependent rect. 13 18
754 221.87 humidity 90.0 43200 < th dose independent rect. 19 18
760 221.88 radiation 30.0 270 < th dose dependent rect. 3 4
762 221.89 humidity 90.0 43200 < th dose independent rect. 11 20
768 221.90 humidity 80.0 43200 > th dose dependent rect. 2 12
770 221.91 humidity 90.0 43200 < th dose independent rect. 19 20
772 221.92 atmosphere 1010.0 270 < th dose independent rect. 3 4
777 221.94 temperature 25.0 4320 < th dose independent rect. 4 4
783 221.94 wind 9.0 270 < th dose independent rect. 7 20
789 221.95 wind 9.0 270 < th dose dependent rect. 3 4
796 221.97 temperature 30.0 30 < th dose independent rect. 7 23
799 221.98 humidity 90.0 43200 > th dose dependent rect. 4 2
835 222.09 temperature 15.0 43200 > th dose independent rect. 5 5
847 222.12 wind 1.0 270 < th dose dependent rect. 4 1
851 222.13 temperature 25.0 1440 > th dose dependent sin 13 NA
855 222.15 temperature 10.0 270 > th dose independent rect. 3 4
857 222.15 temperature 30.0 270 < th dose independent rect. 3 4
858 222.15 humidity 50.0 270 > th dose independent rect. 3 4
862 222.15 radiation 40.0 270 < th dose independent rect. 3 4
865 222.15 temperature 10.0 270 > th dose independent rect. 7 20
894 222.20 humidity 80.0 43200 > th dose dependent sin 4 NA
895 222.20 humidity 90.0 43200 > th dose dependent rect. 10 20
897 222.21 humidity 90.0 43200 < th dose independent rect. 15 17
913 222.24 humidity 70.0 720 > th dose independent rect. 18 1
925 222.25 humidity 90.0 43200 > th dose dependent rect. 3 4
926 222.25 humidity 90.0 43200 > th dose dependent rect. 19 16
935 222.26 humidity 90.0 43200 > th dose dependent rect. 18 13
937 222.27 humidity 90.0 43200 < th dose independent rect. 5 1
938 222.27 humidity 90.0 43200 < th dose independent rect. 20 4
939 222.27 radiation 1.0 90 < th dose dependent sin 10 NA
945 222.28 wind 5.0 270 < th dose independent rect. 4 1
964 222.29 humidity 90.0 43200 < th dose independent sin 6 NA
972 222.30 temperature 30.0 720 > th dose dependent rect. 18 1