Os02g0713600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os02g0713600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.68 | 0.256 | 2.92 | -0.0625 | 0.0523 | 0.415 | -0.0281 | 2.04 | 0.0298 | 10.5 | 0.7031 | 20 | -- | -- |
| 30.73 | 0.258 | 2.93 | -0.0841 | 0.0396 | 0.61 | -0.11 | -- | 0.0307 | 10.3 | 0.8 | 20 | -- | -- |
| 29.46 | 0.253 | 2.93 | -0.0654 | 0.0628 | 0.325 | -- | 2.55 | 0.0236 | 10.9 | 0.3 | 21 | -- | -- |
| 30.78 | 0.258 | 2.93 | -0.0879 | 0.0431 | 0.626 | -- | -- | 0.0312 | 11.8 | 0.8 | 20 | -- | -- |
| 29.62 | 0.253 | 2.92 | -0.0577 | -- | 0.32 | -- | 2.61 | 0.0297 | -- | 0.3 | 21 | -- | -- |
| 33.8 | 0.273 | 2.93 | -0.0535 | 0.053 | -- | -0.153 | -- | 0.0151 | 8.35 | -- | -- | -- | -- |
| 33.84 | 0.272 | 2.93 | -0.0593 | 0.061 | -- | -- | -- | 0.0146 | 6.73 | -- | -- | -- | -- |
| 30.89 | 0.259 | 2.93 | -0.0874 | -- | 0.613 | -- | -- | 0.0306 | -- | 0.8 | 20 | -- | -- |
| 30.98 | 0.259 | 2.93 | -- | 0.0439 | 0.613 | -- | -- | 0.0402 | 11.8 | 0.8 | 20 | -- | -- |
| 34.03 | 0.273 | 2.93 | -0.0579 | -- | -- | -- | -- | 0.0158 | -- | -- | -- | -- | -- |
| 33.93 | 0.272 | 2.93 | -- | 0.0603 | -- | -- | -- | 0.0212 | 6.79 | -- | -- | -- | -- |
| 31.1 | 0.26 | 2.93 | -- | -- | 0.598 | -- | -- | 0.0397 | -- | 0.8 | 20 | -- | -- |
| 34.12 | 0.273 | 2.93 | -- | -- | -- | -- | -- | 0.0222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.48 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 4 | 28.76 | wind | 1 | 30 | < th | dose dependent | rect. | 6 | 4 |
| 17 | 29.30 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 3 |
| 30 | 29.40 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 47 | 29.55 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 19 |
| 83 | 29.86 | wind | 1 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 140 | 30.13 | wind | 1 | 10 | < th | dose independent | rect. | 23 | 1 |
| 144 | 30.13 | wind | 1 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 153 | 30.18 | wind | 1 | 10 | < th | dose dependent | rect. | 17 | 8 |
| 208 | 30.29 | wind | 1 | 10 | < th | dose dependent | sin | 13 | NA |
| 218 | 30.35 | wind | 1 | 10 | < th | dose dependent | sin | 22 | NA |
| 234 | 30.38 | wind | 1 | 10 | < th | dose independent | rect. | 15 | 10 |
| 240 | 30.39 | wind | 1 | 10 | < th | dose independent | rect. | 17 | 8 |
| 248 | 30.40 | wind | 1 | 10 | < th | dose independent | sin | 22 | NA |
| 436 | 30.62 | wind | 3 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 450 | 30.63 | wind | 1 | 10 | < th | dose dependent | no | NA | NA |
| 478 | 30.64 | humidity | 70 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 482 | 30.65 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 522 | 30.66 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 529 | 30.66 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 546 | 30.67 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 572 | 30.67 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 626 | 30.69 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 636 | 30.70 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 719 | 30.70 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 822 | 30.72 | wind | 1 | 10 | > th | dose independent | sin | 22 | NA |
| 851 | 30.74 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 953 | 30.82 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |