BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0713600 Os02g0713600|Os02g0713600
         (418 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          114   1e-25
AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691             57   1e-08

>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 11/204 (5%)

Query: 209 AVCG-DSTIEEMSVEMIQKFDKYWKDIQGPMGLATILDPRFKIDYLLGFIETITGQSSEE 267
           A+ G D  +  ++  M +K DKYW+D    + +A ++DPRFK+  +      I G   E+
Sbjct: 480 AIAGEDPFVTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFG---ED 536

Query: 268 CATKVAEVKDTLYDLM-EYEVEDDEDNTESSAPPLVNSDLLSSITARVTSRTPAAIRVKS 326
               +  V D +++L  EY       NT S       +D LS     +   T     +KS
Sbjct: 537 AGKNIKTVDDGIHELFTEYMALPSPQNTTSEGG---KADGLSDFDTYIMETT--GQNLKS 591

Query: 327 ELDRYLEDELVSINTENFKILDWWKVVGTSFPTLRKVARDIFAIPVSTVASESAFSTSGR 386
           ELD+YL++ L+    + F +LDWWK     +PTL K+ARDI +IPVS  A +  F    R
Sbjct: 592 ELDQYLDETLLP-RVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPR 650

Query: 387 VLSEHRSRLTSELLEALMCSQDWL 410
            + E+++ L  E +EAL+C+++WL
Sbjct: 651 EMDEYKTSLRPETVEALICAREWL 674



>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 312 ARVTSRTPAAIRVKSELDRYLEDELVSINTENFKILDWWKVVGTSFPTLRKVARDIFAIP 371
           AR   R   +  V  EL +YL + +V + T+   +LDWWKV    +P L  +ARD  A+ 
Sbjct: 554 ARRKRRGSMSNNVVDELTQYLSESIVPMQTD---VLDWWKVNSGRYPRLSNMARDFLAVQ 610

Query: 372 VSTVASESAFSTSGRVLSEHRSRLTSELLEALMCSQDWLQ 411
            ++ A E  F   G  + + +  +  +  ++++C + W++
Sbjct: 611 ATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIE 650



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,172,810
Number of extensions: 315011
Number of successful extensions: 972
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 317
Effective length of database: 8,337,553
Effective search space: 2643004301
Effective search space used: 2643004301
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)