Os02g0712000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os02g0712000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.27 | 0.446 | 10.5 | -0.679 | 1.26 | 1.38 | -0.222 | -0.685 | -0.388 | 14 | 24.26 | 258 | -- | -- |
| 90.47 | 0.443 | 10.5 | -0.59 | 1.26 | 1.35 | -0.348 | -- | -0.369 | 13.9 | 24.27 | 259 | -- | -- |
| 90.41 | 0.443 | 10.5 | -0.722 | 1.26 | 1.39 | -- | -0.947 | -0.4 | 14 | 24.24 | 248 | -- | -- |
| 90.76 | 0.444 | 10.5 | -0.585 | 1.28 | 1.3 | -- | -- | -0.358 | 14 | 24.24 | 259 | -- | -- |
| 151.7 | 0.577 | 10.6 | -1.1 | -- | 2.57 | -- | -2.6 | -0.611 | -- | 24.24 | 248 | -- | -- |
| 118.81 | 0.511 | 10.5 | -0.359 | 1.77 | -- | 0.245 | -- | -0.22 | 14.9 | -- | -- | -- | -- |
| 119.01 | 0.511 | 10.5 | -0.353 | 1.77 | -- | -- | -- | -0.219 | 14.9 | -- | -- | -- | -- |
| 152.01 | 0.574 | 10.6 | -0.845 | -- | 2.34 | -- | -- | -0.521 | -- | 24.2 | 95 | -- | -- |
| 99.29 | 0.464 | 10.5 | -- | 1.35 | 1.13 | -- | -- | -0.277 | 14.2 | 24.4 | 263 | -- | -- |
| 299.04 | 0.808 | 10.5 | -0.429 | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
| 122.31 | 0.517 | 10.5 | -- | 1.78 | -- | -- | -- | -0.179 | 14.9 | -- | -- | -- | -- |
| 168.37 | 0.604 | 10.5 | -- | -- | 2.23 | -- | -- | -0.408 | -- | 24.2 | 97 | -- | -- |
| 303.89 | 0.814 | 10.5 | -- | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 6 | 88.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 10 | 88.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 29 | 89.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 38 | 89.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 41 | 89.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 42 | 89.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 68 | 90.42 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 72 | 90.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 93 | 90.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 98 | 90.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 111 | 90.96 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 142 | 91.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 171 | 91.39 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 172 | 91.40 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 188 | 91.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 190 | 91.53 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |
| 201 | 91.61 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 225 | 91.82 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 7 |
| 234 | 91.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 253 | 91.99 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 9 |
| 279 | 92.06 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 285 | 92.10 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 323 | 92.33 | temperature | 30 | 720 | < th | dose independent | sin | 4 | NA |
| 356 | 92.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 387 | 92.52 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 21 |
| 448 | 92.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 492 | 92.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 537 | 92.99 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 558 | 93.04 | temperature | 30 | 720 | > th | dose independent | sin | 3 | NA |
| 647 | 93.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 674 | 93.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 683 | 93.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 703 | 93.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 775 | 93.74 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 854 | 93.94 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 882 | 93.99 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 890 | 94.00 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 20 |
| 915 | 94.04 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |