Os02g0706500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CbxX/CfqX family protein.
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Os02g0706500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CbxX/CfqX family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.09 | 0.376 | 8.2 | 0.519 | 2.62 | 1.8 | 0.809 | 0.861 | -0.207 | 17.1 | 20.4 | 37 | -- | -- |
| 63.48 | 0.374 | 8.19 | 0.531 | 2.62 | 1.36 | 0.733 | -- | -0.187 | 17 | 21.39 | 30 | -- | -- |
| 64.78 | 0.378 | 8.19 | 0.541 | 2.63 | 1.31 | -- | -0.131 | -0.179 | 17 | 21.55 | 34 | -- | -- |
| 64.8 | 0.377 | 8.19 | 0.532 | 2.63 | 1.34 | -- | -- | -0.18 | 17 | 21.55 | 34 | -- | -- |
| 417.45 | 0.957 | 8.16 | 0.302 | -- | -0.424 | -- | -3.68 | -0.336 | -- | 18.3 | 38 | -- | -- |
| 80.31 | 0.42 | 8.22 | 0.298 | 2.56 | -- | 0.706 | -- | -0.31 | 17.2 | -- | -- | -- | -- |
| 81.56 | 0.423 | 8.22 | 0.298 | 2.56 | -- | -- | -- | -0.306 | 17.2 | -- | -- | -- | -- |
| 347.33 | 0.868 | 8.28 | -0.124 | -- | -2.25 | -- | -- | -0.65 | -- | 64 | 247 | -- | -- |
| 71.63 | 0.394 | 8.21 | -- | 2.61 | 1.09 | -- | -- | -0.26 | 17.1 | 21.6 | 11 | -- | -- |
| 424.14 | 0.962 | 8.19 | 0.208 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 83.89 | 0.428 | 8.23 | -- | 2.55 | -- | -- | -- | -0.339 | 17.2 | -- | -- | -- | -- |
| 348.16 | 0.869 | 8.25 | -- | -- | -2.2 | -- | -- | -0.639 | -- | 70 | 242 | -- | -- |
| 425.29 | 0.963 | 8.19 | -- | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.39 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 17 |
| 5 | 58.98 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 8 | 59.23 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 21 |
| 42 | 61.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 6 |
| 51 | 61.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 55 | 61.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 63 | 62.11 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 64 | 62.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 76 | 62.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 78 | 62.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 95 | 62.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 103 | 62.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 113 | 62.65 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 121 | 62.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 146 | 62.91 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 15 | 17 |
| 167 | 63.05 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 21 |
| 177 | 63.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 194 | 63.37 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 239 | 63.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 242 | 63.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 9 |
| 255 | 63.71 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 21 |
| 295 | 63.90 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 329 | 64.05 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 334 | 64.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 365 | 64.20 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 20 |
| 368 | 64.21 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 16 |
| 369 | 64.21 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 19 |
| 461 | 64.42 | radiation | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 473 | 64.44 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 12 | 10 |
| 538 | 64.54 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 15 |
| 551 | 64.57 | temperature | 20 | 30 | < th | dose dependent | sin | 8 | NA |
| 603 | 64.67 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 12 |
| 616 | 64.68 | temperature | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 622 | 64.69 | temperature | 20 | 30 | < th | dose dependent | rect. | 20 | 22 |
| 641 | 64.73 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 652 | 64.75 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 15 |
| 690 | 64.80 | temperature | 20 | 30 | < th | dose independent | rect. | 6 | 22 |
| 699 | 64.81 | temperature | 20 | 30 | < th | dose dependent | no | NA | NA |
| 708 | 64.81 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 750 | 64.85 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 770 | 64.88 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 20 |
| 875 | 64.99 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 986 | 65.11 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 20 |