Os02g0705000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NmrA-like family protein.
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Os02g0705000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NmrA-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.89 | 0.364 | 9.66 | 0.565 | 0.557 | 1.03 | -0.28 | 1.21 | -0.159 | 22 | 25.3 | 242 | -- | -- |
| 60.44 | 0.362 | 9.67 | 0.448 | 0.546 | 1.12 | -0.346 | -- | -0.179 | 21.9 | 25.38 | 242 | -- | -- |
| 60.12 | 0.361 | 9.65 | 0.595 | 0.588 | 1.02 | -- | 1.42 | -0.148 | 21.9 | 25.39 | 206 | -- | -- |
| 60.53 | 0.362 | 9.67 | 0.423 | 0.591 | 1.18 | -- | -- | -0.197 | 22.3 | 25.29 | 203 | -- | -- |
| 71.23 | 0.393 | 9.65 | 0.534 | -- | 1.18 | -- | 1.03 | -0.205 | -- | 24.78 | 556 | -- | -- |
| 83.24 | 0.428 | 9.66 | 0.612 | 0.802 | -- | -0.0898 | -- | -0.122 | 19.7 | -- | -- | -- | -- |
| 83.26 | 0.427 | 9.66 | 0.614 | 0.802 | -- | -- | -- | -0.122 | 19.7 | -- | -- | -- | -- |
| 71.28 | 0.393 | 9.67 | 0.363 | -- | 1.27 | -- | -- | -0.25 | -- | 24.38 | 540 | -- | -- |
| 65.01 | 0.376 | 9.69 | -- | 0.594 | 1.27 | -- | -- | -0.267 | 22.6 | 24.91 | 201 | -- | -- |
| 117.85 | 0.507 | 9.64 | 0.604 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 93.21 | 0.452 | 9.68 | -- | 0.797 | -- | -- | -- | -0.191 | 19.7 | -- | -- | -- | -- |
| 74.61 | 0.402 | 9.68 | -- | -- | 1.33 | -- | -- | -0.316 | -- | 23.96 | 551 | -- | -- |
| 127.47 | 0.527 | 9.66 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 5 | 59.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 21 | 59.88 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 25 | 59.89 | temperature | 15 | 720 | > th | dose dependent | sin | 23 | NA |
| 29 | 59.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 35 | 60.02 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 36 | 60.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 47 | 60.09 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 13 |
| 54 | 60.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 118 | 60.40 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 119 | 60.40 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 125 | 60.42 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 144 | 60.51 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 157 | 60.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 158 | 60.56 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 184 | 60.67 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 197 | 60.71 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 214 | 60.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 223 | 60.81 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 241 | 60.88 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 250 | 60.91 | temperature | 20 | 14400 | > th | dose independent | sin | 17 | NA |
| 259 | 60.93 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 297 | 61.03 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 374 | 61.26 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 430 | 61.37 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 445 | 61.41 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 468 | 61.48 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 491 | 61.51 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 499 | 61.53 | temperature | 20 | 14400 | < th | dose independent | sin | 17 | NA |
| 509 | 61.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 521 | 61.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 526 | 61.57 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 535 | 61.62 | wind | 5 | 14400 | > th | dose independent | sin | 8 | NA |
| 540 | 61.63 | wind | 5 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 571 | 61.69 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 580 | 61.71 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 609 | 61.76 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 640 | 61.82 | wind | 5 | 14400 | < th | dose independent | sin | 8 | NA |
| 652 | 61.85 | wind | 5 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 668 | 61.88 | wind | 5 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 673 | 61.89 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 674 | 61.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 865 | 62.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 891 | 62.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 892 | 62.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 899 | 62.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 900 | 62.21 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 907 | 62.22 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 957 | 62.30 | temperature | 25 | 14400 | < th | dose dependent | sin | 20 | NA |