Os02g0678400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : dTDP-4-dehydrorhamnose reductase family protein.
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Os02g0678400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : dTDP-4-dehydrorhamnose reductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.97 | 0.286 | 13 | 0.146 | 1.04 | -0.717 | 1.32 | 0.0258 | 0.258 | 5.93 | 1.37 | 135 | -- | -- |
| 36.86 | 0.283 | 13 | 0.159 | 0.992 | -0.738 | 1.34 | -- | 0.265 | 6.04 | -1.476 | 167 | -- | -- |
| 40.92 | 0.298 | 13 | 0.146 | 1.01 | -0.689 | -- | -0.185 | 0.246 | 5.84 | 1.014 | 169 | -- | -- |
| 40.98 | 0.298 | 13 | 0.165 | 1.02 | -0.664 | -- | -- | 0.253 | 5.79 | 1.183 | 169 | -- | -- |
| 61.23 | 0.364 | 12.9 | 0.259 | -- | -1.35 | -- | -0.469 | 0.398 | -- | -0.01822 | 493 | -- | -- |
| 43.91 | 0.311 | 13 | 0.154 | 1.24 | -- | 1.05 | -- | 0.222 | 4.76 | -- | -- | -- | -- |
| 46.69 | 0.32 | 13 | 0.148 | 1.25 | -- | -- | -- | 0.217 | 4.65 | -- | -- | -- | -- |
| 61.95 | 0.367 | 13 | 0.244 | -- | -1.4 | -- | -- | 0.358 | -- | -3.296 | 492 | -- | -- |
| 41.66 | 0.301 | 13 | -- | 1.02 | -0.661 | -- | -- | 0.234 | 5.77 | 1.397 | 169 | -- | -- |
| 129.56 | 0.532 | 13 | 0.196 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 47.28 | 0.322 | 13 | -- | 1.25 | -- | -- | -- | 0.2 | 4.64 | -- | -- | -- | -- |
| 63.52 | 0.371 | 13 | -- | -- | -1.4 | -- | -- | 0.33 | -- | -6.028 | 484 | -- | -- |
| 130.58 | 0.533 | 13 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.29 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 2 | 33.51 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 3 | 33.55 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 21 |
| 4 | 33.61 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 7 | 33.76 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 12 | 33.87 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 13 | 33.96 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 21 |
| 16 | 34.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 18 | 34.08 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 21 | 34.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 22 | 34.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 23 | 34.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 26 | 34.15 | radiation | 20.0 | 30 | < th | dose independent | rect. | 4 | 20 |
| 33 | 34.29 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 42 | 34.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 15 |
| 43 | 34.39 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 44 | 34.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 46 | 34.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 51 | 34.46 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 53 | 34.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 70 | 34.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 72 | 34.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 76 | 34.61 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 8 |
| 77 | 34.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 9 |
| 78 | 34.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 82 | 34.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 93 | 34.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 97 | 34.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 98 | 34.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 106 | 34.79 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 109 | 34.79 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 111 | 34.80 | humidity | 50.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 116 | 34.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 117 | 34.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 118 | 34.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 121 | 34.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 123 | 34.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 124 | 34.87 | humidity | 60.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 129 | 34.90 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 135 | 34.91 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 143 | 34.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 158 | 34.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 169 | 35.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 172 | 35.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 173 | 35.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 187 | 35.06 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 199 | 35.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 204 | 35.12 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 211 | 35.13 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 223 | 35.15 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 237 | 35.18 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 240 | 35.18 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 277 | 35.25 | humidity | 70.0 | 10 | > th | dose independent | rect. | 4 | 20 |
| 286 | 35.27 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 9 |
| 287 | 35.27 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 310 | 35.31 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 324 | 35.34 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 17 |
| 330 | 35.34 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 331 | 35.34 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 20 |
| 335 | 35.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 341 | 35.38 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 346 | 35.39 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 348 | 35.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 361 | 35.41 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 365 | 35.41 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 367 | 35.42 | wind | 1.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 370 | 35.42 | radiation | 30.0 | 90 | < th | dose independent | rect. | 16 | 19 |
| 372 | 35.42 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 379 | 35.43 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 381 | 35.43 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 382 | 35.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 383 | 35.43 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 384 | 35.43 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 389 | 35.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 391 | 35.43 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 394 | 35.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 397 | 35.44 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 449 | 35.50 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 11 |
| 460 | 35.51 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 9 |
| 471 | 35.53 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 488 | 35.55 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 499 | 35.56 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 509 | 35.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 517 | 35.59 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 13 |
| 542 | 35.62 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 572 | 35.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 577 | 35.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 581 | 35.67 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 600 | 35.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 606 | 35.71 | temperature | 30.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 627 | 35.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 632 | 35.75 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 685 | 35.82 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 714 | 35.86 | radiation | 1.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 725 | 35.87 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 787 | 35.93 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 805 | 35.94 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 17 |
| 815 | 35.95 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 864 | 36.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 869 | 36.02 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 885 | 36.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 897 | 36.05 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 10 |