Os02g0678200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0678200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 323.22 | 0.845 | 12.4 | -1.14 | 0.545 | -3.07 | -0.0749 | -0.466 | -0.696 | 7.42 | 1.918 | 84 | 7.08 | 19.9 |
| 323.9 | 0.838 | 12.4 | -1.17 | 0.561 | -3.05 | 0.4 | -- | -0.701 | 7.65 | 1.898 | 86 | 7.11 | 19.9 |
| 323.24 | 0.837 | 12.4 | -1.14 | 0.545 | -3.07 | -- | -0.466 | -0.696 | 7.42 | 1.918 | 84 | 7.08 | 19.9 |
| 324.16 | 0.839 | 12.4 | -1.16 | 0.538 | -3.09 | -- | -- | -0.703 | 7.22 | 1.91 | 86 | 7.12 | 19.9 |
| 331.63 | 0.848 | 12.4 | -1.08 | -- | -3.22 | -- | -0.331 | -0.692 | -- | 2.34 | 83 | 7.12 | 19.9 |
| 518.91 | 1.07 | 12.3 | -0.966 | 3.74 | -- | 0.412 | -- | -0.642 | 10.3 | -- | -- | -- | -- |
| 519.59 | 1.07 | 12.3 | -0.95 | 3.74 | -- | -- | -- | -0.641 | 10.3 | -- | -- | -- | -- |
| 330.62 | 0.847 | 12.4 | -1.14 | -- | -3.3 | -- | -- | -0.683 | -- | 2.33 | 86 | 7.19 | 19.8 |
| 358.6 | 0.882 | 12.4 | -- | 0.516 | -3.03 | -- | -- | -0.606 | 7.68 | 2.328 | 86 | 7.08 | 19.9 |
| 1372.09 | 1.73 | 12.4 | -1.01 | -- | -- | -- | -- | -0.651 | -- | -- | -- | -- | -- |
| 543.37 | 1.09 | 12.3 | -- | 3.75 | -- | -- | -- | -0.535 | 10.3 | -- | -- | -- | -- |
| 364.42 | 0.889 | 12.4 | -- | -- | -3.3 | -- | -- | -0.568 | -- | 2.42 | 87 | 7.41 | 19.5 |
| 1398.84 | 1.75 | 12.4 | -- | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 329.42 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 2 | 330.07 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 16 |
| 3 | 330.20 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 11 | 339.82 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 13 | 340.00 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 14 | 340.53 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 15 | 340.60 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 46 | 347.94 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 55 | 350.78 | radiation | 1.0 | 90 | < th | dose independent | sin | 16 | NA |
| 57 | 350.86 | radiation | 1.0 | 90 | > th | dose independent | sin | 16 | NA |
| 76 | 355.80 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 18 |
| 78 | 356.44 | radiation | 10.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 80 | 358.00 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 84 | 358.52 | humidity | 60.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 90 | 359.89 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 10 |
| 108 | 363.83 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 7 |
| 147 | 366.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 14 |
| 148 | 366.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 188 | 369.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 194 | 369.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 195 | 369.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 196 | 369.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 201 | 370.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 233 | 374.03 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 248 | 375.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 258 | 376.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 263 | 377.20 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 15 |
| 264 | 377.20 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 277 | 378.90 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 297 | 379.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 18 |
| 298 | 379.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 299 | 380.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 306 | 380.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 341 | 382.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 342 | 382.69 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 17 | 10 |
| 362 | 383.32 | temperature | 25.0 | 90 | > th | dose independent | rect. | 12 | 6 |
| 371 | 383.52 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 373 | 383.65 | humidity | 80.0 | 270 | < th | dose independent | rect. | 11 | 5 |
| 375 | 383.80 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 389 | 384.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 5 |
| 399 | 384.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 407 | 385.41 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 3 |
| 416 | 385.95 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 417 | 385.95 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 423 | 386.52 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 443 | 386.95 | humidity | 90.0 | 10 | < th | dose independent | rect. | 12 | 7 |
| 460 | 387.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 474 | 387.41 | wind | 9.0 | 90 | < th | dose independent | rect. | 18 | 9 |
| 477 | 387.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 479 | 387.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 480 | 387.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 482 | 387.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 486 | 387.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 6 |
| 488 | 387.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 512 | 388.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 521 | 389.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 4 |
| 557 | 390.34 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 567 | 390.80 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 631 | 392.97 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 646 | 393.07 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 652 | 393.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 22 |
| 653 | 393.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 659 | 393.33 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 706 | 394.05 | radiation | 1.0 | 270 | > th | dose dependent | sin | 17 | NA |
| 715 | 394.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 732 | 394.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 738 | 394.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 739 | 394.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 769 | 395.21 | radiation | 1.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 784 | 395.75 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 5 |
| 857 | 397.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 5 |
| 859 | 397.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 866 | 397.63 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 868 | 397.71 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 875 | 397.80 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 878 | 397.80 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 882 | 397.80 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 884 | 397.80 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 885 | 397.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 905 | 397.80 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 943 | 398.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 5 |
| 944 | 398.30 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 5 |
| 946 | 398.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 983 | 399.19 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 19 | 9 |