BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0678200 Os02g0678200|J013037D10
(230 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22990.2 | chr4:12048240-12050984 REVERSE LENGTH=701 297 4e-81
AT1G63010.5 | chr1:23347972-23351026 REVERSE LENGTH=709 288 2e-78
AT4G11810.1 | chr4:7105446-7108450 FORWARD LENGTH=708 287 3e-78
>AT4G22990.2 | chr4:12048240-12050984 REVERSE LENGTH=701
Length = 700
Score = 297 bits (760), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 145/230 (63%), Positives = 174/230 (75%)
Query: 1 MLCRLGSARAVNRRYISDCVPLKTRLQASAGFVSASALGMACGPALAGLLQTNFKIYGFT 60
+ C LGSARAVNRRYISDCVPLK R+QASAGFVSASALGMACGPALAGLLQ FKIY T
Sbjct: 348 LFCGLGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQIRFKIYKLT 407
Query: 61 FDQNTLPGWIMCLAWITYLFWLWISFKEPDHIVRENSVNTPSSDSAGHRRNSNLEDGLAQ 120
F+Q+TLPGW+M +AW+ YL WL ISF+EP E + S+ + ++ NLE G+ Q
Sbjct: 408 FNQDTLPGWVMAVAWLIYLVWLAISFREPAREPEEIPKTSEESNHSEAVQDVNLEKGMKQ 467
Query: 121 PFLIDAKESLXXXXXXXXXXXXXXXXSHKPATSLAAAYRLLTPSVKVQLLIYFMLKFAME 180
P L+ ++E S PA S+ AAYRLLTPSVKVQLLIYFMLK+AME
Sbjct: 468 PLLLTSEEIEEQGEDECDGSEEASEDSRTPANSILAAYRLLTPSVKVQLLIYFMLKYAME 527
Query: 181 ILLSESSVVTTFYFNWSTSTVAMFLAVLGLTVLPVNVIVGSYVTNLFQDR 230
ILLSESSV+TT+YF WSTS+VA+FL LGLTVLPVN++VGSY++N+F+DR
Sbjct: 528 ILLSESSVITTYYFGWSTSSVAIFLFCLGLTVLPVNLVVGSYISNMFEDR 577
>AT1G63010.5 | chr1:23347972-23351026 REVERSE LENGTH=709
Length = 708
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 173/230 (75%), Gaps = 3/230 (1%)
Query: 3 CRLGSARAVNRRYISDCVPLKTRLQASAGFVSASALGMACGPALAGLLQTNFKIYGFTFD 62
C LGSARAVNRRYISDCVPL+ R+QASAGFVSASALGMACGPALAGLLQ FK Y FTF+
Sbjct: 357 CGLGSARAVNRRYISDCVPLRIRMQASAGFVSASALGMACGPALAGLLQIKFKFYKFTFN 416
Query: 63 QNTLPGWIMCLAWITYLFWLWISFKEPDHIVRENSVNTPSSDSAGHRR--NSNLEDGLAQ 120
Q+TLPGW+M +AW+ YL WL ISF+EP + N + ++ R +S +E+GL
Sbjct: 417 QSTLPGWVMAVAWLFYLVWLCISFREPLRDTEDGEKNNRNETTSATDRVESSRVEEGLRL 476
Query: 121 PFLIDAKESLXXXXXXXXXXXXXXXXSHKPATSLAAAYRLLTPSVKVQLLIYFMLKFAME 180
P LI + SHKPA S AYRLLTPSVKVQLLIYFMLK++ME
Sbjct: 477 PLLITSGIK-PEDEEECDESEESPEDSHKPANSFIEAYRLLTPSVKVQLLIYFMLKYSME 535
Query: 181 ILLSESSVVTTFYFNWSTSTVAMFLAVLGLTVLPVNVIVGSYVTNLFQDR 230
ILLSESSV+T++YF+W+TS+VA+FLA LGLTVLP+N++VGSY++N+F+DR
Sbjct: 536 ILLSESSVITSYYFSWTTSSVAIFLACLGLTVLPINILVGSYISNMFEDR 585
>AT4G11810.1 | chr4:7105446-7108450 FORWARD LENGTH=708
Length = 707
Score = 287 bits (735), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/237 (60%), Positives = 175/237 (73%), Gaps = 10/237 (4%)
Query: 1 MLCRLGSARAVNRRYISDCVPLKTRLQASAGFVSASALGMACGPALAGLLQTNFKIYGFT 60
+ C GSARAVNRRYISDCVPLK R+QASAGFVSASALGMACGPALAGLLQT+FKI T
Sbjct: 351 LFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTDFKIKNVT 410
Query: 61 FDQNTLPGWIMCLAWITYLFWLWISFKEPDHIVRENSVNTPSSDSAGHR-------RNSN 113
F+Q+TLPGW+M +AW+ YL WL ISF+EP RE S +S + ++ N
Sbjct: 411 FNQDTLPGWVMAVAWLLYLVWLAISFREP---AREPEEIHTSQESTSEQIFCGEADQDGN 467
Query: 114 LEDGLAQPFLIDAKESLXXXXXXXXXXXXXXXXSHKPATSLAAAYRLLTPSVKVQLLIYF 173
+E GL +P L+ ++E+ S KPA S AAY+LLTPSVKVQLLIYF
Sbjct: 468 IEKGLKKPLLLASEETEHDEEDDGDGSEESSDDSRKPANSFVAAYKLLTPSVKVQLLIYF 527
Query: 174 MLKFAMEILLSESSVVTTFYFNWSTSTVAMFLAVLGLTVLPVNVIVGSYVTNLFQDR 230
MLK+AMEILLSESSVVTT+YF WS S+V++FL LGLTVLPVN++VGSY++N+F+DR
Sbjct: 528 MLKYAMEILLSESSVVTTYYFGWSMSSVSIFLFCLGLTVLPVNLVVGSYISNMFEDR 584
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,340,634
Number of extensions: 154356
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)