Os02g0677600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0677600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.85 | 0.289 | 13.4 | -0.542 | 1.8 | -0.34 | -0.439 | -0.297 | -0.216 | 23 | 24.6 | 409 | -- | -- |
| 38.15 | 0.288 | 13.4 | -0.603 | 1.8 | -0.34 | -0.433 | -- | -0.241 | 23 | 24.57 | 416 | -- | -- |
| 38.66 | 0.29 | 13.4 | -0.535 | 1.8 | -0.343 | -- | -0.269 | -0.22 | 23 | 24.6 | 399 | -- | -- |
| 38.82 | 0.29 | 13.5 | -0.617 | 1.82 | -0.362 | -- | -- | -0.254 | 23.1 | 24.5 | 362 | -- | -- |
| 183.1 | 0.63 | 13.4 | -0.767 | -- | -1.17 | -- | -0.351 | -0.522 | -- | 25.6 | 804 | -- | -- |
| 44.26 | 0.312 | 13.4 | -0.522 | 1.86 | -- | -0.452 | -- | -0.0841 | 22.7 | -- | -- | -- | -- |
| 45.11 | 0.315 | 13.4 | -0.504 | 1.86 | -- | -- | -- | -0.0828 | 22.7 | -- | -- | -- | -- |
| 177.94 | 0.621 | 13.5 | -0.883 | -- | -1.33 | -- | -- | -0.503 | -- | 25.6 | 823 | -- | -- |
| 48.43 | 0.324 | 13.4 | -- | 1.84 | -0.253 | -- | -- | -0.141 | 22.9 | 24.6 | 333 | -- | -- |
| 259.28 | 0.752 | 13.4 | -0.468 | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
| 51.8 | 0.337 | 13.4 | -- | 1.86 | -- | -- | -- | -0.0267 | 22.7 | -- | -- | -- | -- |
| 195.23 | 0.651 | 13.4 | -- | -- | -1.23 | -- | -- | -0.422 | -- | 25.22 | 783 | -- | -- |
| 265.05 | 0.76 | 13.4 | -- | -- | -- | -- | -- | -0.0209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 2 | 34.03 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 5 | 34.34 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 14 | 34.79 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 19 | 35.09 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 21 |
| 31 | 35.24 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 37 | 35.44 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 57 | 35.95 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 62 | 36.05 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 64 | 36.08 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 72 | 36.19 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 16 |
| 93 | 36.52 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 94 | 36.54 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 8 |
| 106 | 36.66 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 111 | 36.72 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 8 |
| 122 | 36.78 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 132 | 36.84 | radiation | 1.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 140 | 36.90 | radiation | 1.0 | 10 | > th | dose independent | sin | 5 | NA |
| 144 | 36.91 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 155 | 36.98 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 186 | 37.11 | humidity | 80.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 190 | 37.11 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 199 | 37.16 | radiation | 1.0 | 10 | < th | dose independent | sin | 5 | NA |
| 200 | 37.16 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 16 |
| 215 | 37.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 222 | 37.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 224 | 37.27 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 14 |
| 227 | 37.27 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 249 | 37.33 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 12 |
| 251 | 37.33 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 254 | 37.34 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 257 | 37.35 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 262 | 37.36 | wind | 3.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 267 | 37.36 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 276 | 37.38 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 283 | 37.41 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 13 | 16 |
| 311 | 37.48 | temperature | 15.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 338 | 37.55 | wind | 9.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 340 | 37.55 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 341 | 37.55 | humidity | 50.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 344 | 37.55 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 351 | 37.55 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 353 | 37.55 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 376 | 37.61 | wind | 1.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 384 | 37.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 386 | 37.64 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 19 |
| 388 | 37.64 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 389 | 37.65 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 19 |
| 397 | 37.66 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 402 | 37.67 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 416 | 37.69 | wind | 9.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 423 | 37.71 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 424 | 37.71 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 525 | 37.89 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 560 | 37.96 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 17 |
| 568 | 37.97 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 570 | 37.98 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 571 | 37.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 573 | 37.98 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 585 | 38.00 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 589 | 38.01 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 24 | 5 |
| 594 | 38.01 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 24 | 5 |
| 605 | 38.02 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 610 | 38.03 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 611 | 38.03 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 14 |
| 620 | 38.05 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 623 | 38.06 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 634 | 38.06 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 639 | 38.07 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 650 | 38.08 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 660 | 38.10 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 689 | 38.13 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 690 | 38.14 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 697 | 38.14 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 712 | 38.16 | wind | 9.0 | 10 | < th | dose independent | rect. | 2 | 3 |
| 713 | 38.16 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 715 | 38.16 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 3 |
| 716 | 38.16 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 719 | 38.16 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 720 | 38.16 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 3 |
| 722 | 38.16 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 3 |
| 727 | 38.16 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 21 |
| 728 | 38.16 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 3 |
| 753 | 38.18 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 757 | 38.18 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 769 | 38.19 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 12 |
| 772 | 38.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 21 |
| 782 | 38.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 783 | 38.19 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 786 | 38.20 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 790 | 38.20 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 797 | 38.21 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 798 | 38.21 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 800 | 38.21 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 801 | 38.21 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 810 | 38.22 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 821 | 38.23 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 17 |
| 826 | 38.23 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 21 |
| 839 | 38.24 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 840 | 38.24 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 879 | 38.25 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 890 | 38.27 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 910 | 38.28 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 918 | 38.29 | temperature | 25.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 927 | 38.30 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 942 | 38.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 22 |
| 943 | 38.31 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 968 | 38.34 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 982 | 38.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 999 | 38.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 1000 | 38.35 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |